cassava44959.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava44959.m1 T246483_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava44959.m1 LOB 60 158

Links

Other LOB family TFs
Other Manihot esculenta TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02335 Aegilops tauschii F775_02335 N 0.778
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.859
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.848
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.828
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.828
LBD11 Arabidopsis thaliana AT2G28500 N 0.818
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.838
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.848
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.758
Bo8g112780 Brassica oleracea Bo8g112780 N 0.798
Bo5g008590 Brassica oleracea Bo5g008590 N 0.838
Bo4g165420 Brassica oleracea Bo4g165420 N 0.818
Bo3g040220 Brassica oleracea Bo3g040220 N 0.808
Bo01039s010 Brassica oleracea Bo01039s010 N 0.828
Bra035698 Brassica rapa Bra035698 N 0.838
Bra031599 Brassica rapa Bra031599 N 0.788
Bra011942 Brassica rapa Bra011942 N 0.818
Bra000491 Brassica rapa Bra000491 N 0.808
Bra018675 Brassica rapa Bra018675 N 0.838
PK24688.1 Cannabis sativa PK24688.1 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.765
PK27389.1 Cannabis sativa PK27389.1 I 0.909
PK23777.1 Cannabis sativa PK23777.1 I 0.909
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.828
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.838
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.828
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.848
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.804
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.897
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.889
Ca_04287 Cicer arietinum Ca_04287 I 0.889
Ca_13575 Cicer arietinum Ca_13575 I 0.707
Ca_14605 Cicer arietinum Ca_14605 I 0.889
Ca_02507 Cicer arietinum Ca_02507 N 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.889
Cla005133 Citrullus lanatus Cla005133 N 0.798
Cla020379 Citrullus lanatus Cla020379 I 0.879
Cla005134 Citrullus lanatus Cla005134 N 0.838
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.909
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.788
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.838
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.909
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.909
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.788
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.909
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.869
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.859
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.798
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.737
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.747
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.727
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.869
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.787
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.889
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.818
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.848
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.838
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.879
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.909
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.899
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.899
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.899
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.909
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.899
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.849
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.909
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.919
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.899
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.879
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.869
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.828
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.778
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.848
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.727
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.758
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.869
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.828
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.828
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.869
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.909
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.712
MDP0000319331 Malus domestica MDP0000319331 I 0.899
MDP0000822986 Malus domestica MDP0000822986 I 0.889
MDP0000879799 Malus domestica MDP0000879799 N 0.899
MDP0000318244 Malus domestica MDP0000318244 I 0.879
MDP0000218986 Malus domestica MDP0000218986 I 0.879
MDP0000183071 Malus domestica MDP0000183071 N 0.725
MDP0000151784 Malus domestica MDP0000151784 I 0.919
MDP0000123013 Malus domestica MDP0000123013 I 0.919
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.919
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.739
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.851
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.939
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.919
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.869
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.889
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.889
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707
mgf022524m Mimulus guttatus mgf022524m N 0.838
mgf019622m Mimulus guttatus mgf019622m N 0.798
mgf015666m Mimulus guttatus mgf015666m N 0.838
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.869
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.818
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.717
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.848
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.747
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.758
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.889
OBART05G01640 Oryza barthii OBART05G01640 N 0.808
OBART03G13260 Oryza barthii OBART03G13260 N 0.808
OBART03G28270 Oryza barthii OBART03G28270 I 0.705
OB05G11740 Oryza brachyantha OB05G11740 I 0.848
OB03G23270 Oryza brachyantha OB03G23270 N 0.788
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.838
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.808
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.808
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.737
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.808
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.808
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.789
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.737
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.737
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.750
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.808
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.737
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.808
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.737
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.808
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.763
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.737
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.808
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.789
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.737
OS03G0659700 Oryza sativa OS03G0659700 I 0.766
OS03G0287400 Oryza sativa OS03G0287400 N 0.808
OS05G0123000 Oryza sativa OS05G0123000 I 0.789
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.838
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.838
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.818
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.818
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.833
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.879
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.712
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.889
Pm000938 Prunus mume Pm000938 I 0.899
Pm018585 Prunus mume Pm018585 I 0.899
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.919
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.909
30111.m000703 Ricinus communis 30111.m000703 I 0.919
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.889
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.889
Si037280m.g Setaria italica Si037280m.g N 0.788
Si024430m.g Setaria italica Si024430m.g N 0.818
Si037583m.g Setaria italica Si037583m.g I 0.727
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.869
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.830
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.879
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.828
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.838
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.828
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.879
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.717
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.872
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.848
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.818
TCM_043081 Theobroma cacao TCM_043081 I 0.889
TCM_041094 Theobroma cacao TCM_041094 I 0.919
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.778
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.778
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.778
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.778
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.758
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.707
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.707
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.707
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.727
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.717
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.770
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.727
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.879
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.737
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.859
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.889
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.747
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.758
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.798
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.737
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.727
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.798
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.818
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.838
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.808