Cucsa.326100 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.326100 T246526_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.828 0.828
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.326100.1 LOB 65 163

Links

Other LOB family TFs
Other Cucumis sativus TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla007391 Citrullus lanatus Cla007391 I 0.889
Bo4g190210 Brassica oleracea Bo4g190210 I 0.889
PK17217.1 Cannabis sativa PK17217.1 I 0.889
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.879
29729.m002335 Ricinus communis 29729.m002335 I 0.879
Bra000188 Brassica rapa Bra000188 I 0.879
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.879
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.879
Bo3g034980 Brassica oleracea Bo3g034980 I 0.879
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.869
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.869
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.869
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.869
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.869
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.869
TCM_045438 Theobroma cacao TCM_045438 I 0.869
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.869
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.869
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.869
Bra016992 Brassica rapa Bra016992 I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.859
Ca_04126 Cicer arietinum Ca_04126 I 0.859
mgf011471m Mimulus guttatus mgf011471m I 0.859
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.859
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.859
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.859
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.859
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.859
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.859
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.848
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.848
Bo4g012620 Brassica oleracea Bo4g012620 I 0.848
TCM_042262 Theobroma cacao TCM_042262 I 0.848
Bra004572 Brassica rapa Bra004572 I 0.848
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.848
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.848
MDP0000278334 Malus domestica MDP0000278334 I 0.848
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.848
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.848
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.838
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.838
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.838
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.838
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.838
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.828
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.828
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
Bra018320 Brassica rapa Bra018320 I 0.828
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.828
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.828
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.828
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
Pm000277 Prunus mume Pm000277 I 0.818
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.818
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.818
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.818
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.818
29957.m001411 Ricinus communis 29957.m001411 I 0.818
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.818
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.818
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.808
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.808
Ca_15642 Cicer arietinum Ca_15642 I 0.808
OBART05G04570 Oryza barthii OBART05G04570 I 0.808
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.808
OS05G0165450 Oryza sativa OS05G0165450 I 0.808
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.808
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.808
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.808
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.808
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.808
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.808
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.808
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.808
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.808
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.808
F775_52636 Aegilops tauschii F775_52636 I 0.808
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.808
OB01G44400 Oryza brachyantha OB01G44400 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.808
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.808
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.808
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
Si004575m.g Setaria italica Si004575m.g I 0.798
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.798
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.798
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.798
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.798
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.798
OBART01G35680 Oryza barthii OBART01G35680 I 0.798
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.798
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.798
F775_25790 Aegilops tauschii F775_25790 I 0.798
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.798
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.798
OS01G0825000 Oryza sativa OS01G0825000 I 0.798
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.798
Si012018m.g Setaria italica Si012018m.g I 0.798
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.798
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.788
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.788
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.788
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.788
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.788
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.788
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.788
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.778
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.778
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.778
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.778
OB05G14280 Oryza brachyantha OB05G14280 I 0.778
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.778
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.768
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
Bo4g190140 Brassica oleracea Bo4g190140 I 0.711
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
PK11564.1 Cannabis sativa PK11564.1 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707