Cucsa.339980 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.339980 T246529_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.869 0.869
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.339980.1 LOB 28 126

Links

Other LOB family TFs
Other Cucumis sativus TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI56610 Acyrthosiphon pisum ACYPI56610 N 0.000
ENSAMEG00000017006 Ailuropoda melanoleuca ENSAMEG00000017006 N 0.000
BBA_10208 Beauveria bassiana BBA_10208 N 0.000
BGIBMGA002931 Bombyx mori BGIBMGA002931 N 0.000
BOTBODRAFT_40635 Botryobasidium botryosum BOTBODRAFT_40635 N 0.000
KGM_21779 Danaus plexippus KGM_21779 N 0.000
chd4b Danio rerio ENSDARG00000025789 N 0.000
YQE_12532 Dendroctonus ponderosae YQE_12532 N 0.000
GG13363 Drosophila erecta FBgn0105635 N 0.000
GK17504 Drosophila willistoni FBgn0219503 N 0.000
CHD5 Echinops telfairi ENSETEG00000004120 N 0.000
CHD4 Echinops telfairi ENSETEG00000005912 N 0.000
CHD5 Gallus gallus ENSGALG00000000747 N 0.000
ISCW005933 Ixodes scapularis ISCW005933 N 0.000
LDEC009474 Leptinotarsa decemlineata LDEC009474 N 0.000
CHD5 Macaca mulatta ENSMMUG00000016838 N 0.000
ENSMEUG00000005852 Macropus eugenii ENSMEUG00000005852 N 0.000
MGG_00866 Magnaporthe oryzae MGG_00866 N 0.000
MCINX004608 Melitaea cinxia MCINX004608 N 0.000
CHD4 Microcebus murinus ENSMICG00000006588 N 0.000
ENSMODG00000024829 Monodelphis domestica ENSMODG00000024829 N 0.000
ENSMPUG00000008872 Mustela putorius furo ENSMPUG00000008872 N 0.000
MYCTH_2308522 Myceliophthora thermophila MYCTH_2308522 I 0.000
fgeneshHS_pg.scaffold_50000080 Naegleria gruberi fgeneshHS_pg.scaffold_50000080 N 0.000
CHD4 Ochotona princeps ENSOPRG00000003477 N 0.000
ENSOCUG00000023865 Oryctolagus cuniculus ENSOCUG00000023865 N 0.000
chd3 Oryzias latipes ENSORLG00000007107 N 0.000
CHD3 Pteropus vampyrus ENSPVAG00000016344 N 0.000
ENSSHAG00000004107 Sarcophilus harrisii ENSSHAG00000004107 N 0.000
SINV11745 Solenopsis invicta SINV11745 N 0.000
S40288_05696 Stachybotrys chartarum S40288_05696 N 0.000
S40285_07156 Stachybotrys chlorohalonata S40285_07156 N 0.000
CHD5 Sus scrofa ENSSSCG00000003366 N 0.000
ENSTNIG00000004346 Tetraodon nigroviridis ENSTNIG00000004346 N 0.000
THITE_22048 Thielavia terrestris THITE_22048 I 0.000
TRIATDRAFT_37227 Trichoderma atroviride TRIATDRAFT_37227 N 0.000
TRIVIDRAFT_16124 Trichoderma virens TRIVIDRAFT_16124 N 0.000
chd3 Xenopus tropicalis XB-GENE-1008908 N 0.000
XP_002941963 Xenopus tropicalis XP_002941963 N 0.000