gw1.7.209.1 (Physcomitrella patens)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gw1.7.209.1 T246566_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.724 0.724
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.713 0.713
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.7.209.1 LOB 2 88

Links

Other LOB family TFs
Other Physcomitrella patens TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
e_gw1.69.91.1 Physcomitrella patens e_gw1.69.91.1 I 0.943
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
SELMODRAFT_69267 Selaginella moellendorffii SELMODRAFT_69267 I 0.747
SELMODRAFT_59646 Selaginella moellendorffii SELMODRAFT_59646 I 0.747
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.724
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.724
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.724
F775_25656 Aegilops tauschii F775_25656 I 0.724
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.724
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.724
Bo4g151770 Brassica oleracea Bo4g151770 I 0.724
Bra032153 Brassica rapa Bra032153 I 0.724
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.724
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.724
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.713
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.713
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.713
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.713
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.713
Ca_07463 Cicer arietinum Ca_07463 I 0.713
LOB Vitis vinifera VIT_17s0000g09010 I 0.713
Cla019510 Citrullus lanatus Cla019510 I 0.713
29929.m004500 Ricinus communis 29929.m004500 I 0.713
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.713
30147.m013890 Ricinus communis 30147.m013890 I 0.713
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.713
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.713
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.713
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.713
MDP0000273432 Malus domestica MDP0000273432 I 0.713
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.713
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.713
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.713
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.713
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.713
MDP0000254288 Malus domestica MDP0000254288 I 0.713
MDP0000130659 Malus domestica MDP0000130659 I 0.713
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.713
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.713
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.713
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.713
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.713
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.713
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.713
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.713
mgf014755m Mimulus guttatus mgf014755m I 0.713
Cla005851 Citrullus lanatus Cla005851 I 0.713
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.713
OB01G14220 Oryza brachyantha OB01G14220 I 0.713
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.713
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.713
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.713
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.713
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.713
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.713
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.713
Bra039733 Brassica rapa Bra039733 I 0.713
Bo2g051420 Brassica oleracea Bo2g051420 I 0.713
LBD6 Arabidopsis thaliana AT1G65620 D 0.713
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.713
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.713
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.713
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.713
OS01G0169400 Oryza sativa OS01G0169400 I 0.713
OBART01G04470 Oryza barthii OBART01G04470 I 0.713
TCM_012190 Theobroma cacao TCM_012190 I 0.713
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.713
Si002632m.g Setaria italica Si002632m.g I 0.713
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.713
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.713
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.713
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.713
TCM_024217 Theobroma cacao TCM_024217 I 0.713
MDP0000643326 Malus domestica MDP0000643326 I 0.701
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.701
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.701
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.701
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.701
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.701
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.701
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.701
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.701
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.701
F775_21760 Aegilops tauschii F775_21760 I 0.701
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.701
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.701
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.701
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.701
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.701
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.701
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.701
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.701
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.701
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.701
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.701
mgf004296m Mimulus guttatus mgf004296m I 0.701
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.701
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.701
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.701
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.701
Si002599m.g Setaria italica Si002599m.g I 0.701
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.701