Aquca_009_00958 (Aquilegia coerulea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Aquca_009_00958 T246638_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.724 0.724
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.724 0.724
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.724 0.724
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.704 0.704
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_009_00958.1 LOB 18 118

Links

Other LOB family TFs
Other Aquilegia coerulea TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.766
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.765
TCM_005496 Theobroma cacao TCM_005496 I 0.761
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.759
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.759
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.759
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.755
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.747
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.745
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.735
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.735
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.735
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.735
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.735
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.735
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.735
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.735
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.735
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.735
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.735
30174.m008898 Ricinus communis 30174.m008898 I 0.727
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.727
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.727
Pm017936 Prunus mume Pm017936 I 0.727
Cla007068 Citrullus lanatus Cla007068 I 0.727
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.727
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.724
Bo4g191530 Brassica oleracea Bo4g191530 I 0.724
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.724
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.724
Bra004693 Brassica rapa Bra004693 I 0.724
Bo4g016000 Brassica oleracea Bo4g016000 I 0.724
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.724
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.724
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.724
OS03G0246900 Oryza sativa OS03G0246900 I 0.724
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.724
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.724
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.724
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.724
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.724
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.724
LBD16 Arabidopsis thaliana AT2G42430 D 0.724
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.724
OBART03G10450 Oryza barthii OBART03G10450 I 0.724
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.724
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.724
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.724
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.717
OB10G12360 Oryza brachyantha OB10G12360 I 0.714
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.714
MDP0000254224 Malus domestica MDP0000254224 I 0.714
Bra000257 Brassica rapa Bra000257 I 0.714
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.714
Bra016877 Brassica rapa Bra016877 I 0.714
Bo3g036030 Brassica oleracea Bo3g036030 I 0.714
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.714
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.714
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.707
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.707
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.707
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
Bra037323 Brassica rapa Bra037323 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.707
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.707
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.707
OS10G0162600 Oryza sativa OS10G0162600 I 0.707
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.707
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.707
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.707
Bo9g002160 Brassica oleracea Bo9g002160 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.707
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.704
OB03G20590 Oryza brachyantha OB03G20590 I 0.704
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.704
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.704
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.704
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.704
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.704
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.704
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.704
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.704
LBD30 Arabidopsis thaliana AT4G00220 D 0.704