Bostr.14547s0030 (Boechera stricta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Bostr.14547s0030 T246667_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.788 0.788
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.788 0.788
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.747 0.747
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.14547s0030.1.p LOB 11 110

Links

Other LOB family TFs
Other Boechera stricta TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.838
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.717
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.737
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.838
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.747
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.707
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.737
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.778
LBD31 Arabidopsis thaliana AT4G00210 I 0.939
LBD29 Arabidopsis thaliana AT3G58190 I 0.707
LBD19 Arabidopsis thaliana AT2G45410 D 0.788
LBD18 Arabidopsis thaliana AT2G45420 D 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.747
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.798
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.727
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
Bo4g024610 Brassica oleracea Bo4g024610 I 0.778
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.747
Bo9g002150 Brassica oleracea Bo9g002150 I 0.859
Bo9g002160 Brassica oleracea Bo9g002160 I 0.707
Bo4g195520 Brassica oleracea Bo4g195520 I 0.758
Bra004908 Brassica rapa Bra004908 I 0.768
Bra040312 Brassica rapa Bra040312 I 0.778
Bra040311 Brassica rapa Bra040311 I 0.758
Bra037323 Brassica rapa Bra037323 I 0.707
Bra037322 Brassica rapa Bra037322 I 0.859
Bra036436 Brassica rapa Bra036436 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.747
PK25573.1 Cannabis sativa PK25573.1 I 0.828
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.737
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.990
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.788
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.747
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.980
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.737
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.788
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.747
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.818
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.747
Ca_12213 Cicer arietinum Ca_12213 I 0.717
Ca_19598 Cicer arietinum Ca_19598 I 0.828
Cla007068 Citrullus lanatus Cla007068 I 0.778
Cla002965 Citrullus lanatus Cla002965 I 0.737
Cla007069 Citrullus lanatus Cla007069 I 0.788
Cla015094 Citrullus lanatus Cla015094 I 0.707
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.788
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.778
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.737
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.717
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.788
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.737
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.707
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.778
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.828
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.798
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.707
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.747
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.929
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.808
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.818
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.747
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.707
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.838
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.778
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.848
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.758
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.788
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.778
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.778
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.717
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.828
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.727
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.798
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.818
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.747
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707
MDP0000254224 Malus domestica MDP0000254224 I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.727
MDP0000429067 Malus domestica MDP0000429067 I 0.818
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.717
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.717
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.808
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.788
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.798
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.788
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.838
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.707
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.768
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.788
mgf020735m Mimulus guttatus mgf020735m I 0.818
mgf006429m Mimulus guttatus mgf006429m I 0.758
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.798
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.707
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.788
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OBART03G10450 Oryza barthii OBART03G10450 I 0.798
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OB10G12360 Oryza brachyantha OB10G12360 I 0.788
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.707
OB02G44330 Oryza brachyantha OB02G44330 I 0.707
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.788
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.707
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.798
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.707
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.798
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.788
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.717
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.717
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.707
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.798
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.788
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.707
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.798
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.707
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.788
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.798
OS02G0820500 Oryza sativa OS02G0820500 I 0.707
OS03G0246900 Oryza sativa OS03G0246900 I 0.798
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
OS10G0162600 Oryza sativa OS10G0162600 I 0.788
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.808
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.768
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.747
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.758
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.758
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.727
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.798
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.717
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.745
Pm017935 Prunus mume Pm017935 I 0.808
Pm028642 Prunus mume Pm028642 I 0.747
Pm017936 Prunus mume Pm017936 I 0.778
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.778
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.747
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.818
30174.m008897 Ricinus communis 30174.m008897 I 0.788
30174.m008898 Ricinus communis 30174.m008898 I 0.788
30072.m000955 Ricinus communis 30072.m000955 I 0.717
28428.m000040 Ricinus communis 28428.m000040 I 0.717
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.828
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.798
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
Si019578m.g Setaria italica Si019578m.g I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.737
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.747
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.808
TCM_025849 Theobroma cacao TCM_025849 I 0.727
TCM_005497 Theobroma cacao TCM_005497 I 0.808
TCM_004106 Theobroma cacao TCM_004106 I 0.717
TCM_042730 Theobroma cacao TCM_042730 I 0.717
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.717
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.828
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.818
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.828
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.828
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.778
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.747
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.808
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.798
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.758
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707