Cagra.0567s0001 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.0567s0001 T246708_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.990 0.990
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.990 0.990
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0567s0001.1.p LOB 54 152

Links

Other LOB family TFs
Other Capsella grandiflora TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.990
Bo4g059520 Brassica oleracea Bo4g059520 I 0.990
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.990
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.990
LBD13 Arabidopsis thaliana AT2G30340 D 0.990
Bra018320 Brassica rapa Bra018320 I 0.990
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.980
Bra021627 Brassica rapa Bra021627 I 0.980
Bo4g172950 Brassica oleracea Bo4g172950 I 0.980
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.919
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
mgf011471m Mimulus guttatus mgf011471m I 0.869
29957.m001411 Ricinus communis 29957.m001411 I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.869
Bra016992 Brassica rapa Bra016992 I 0.869
mgf020556m Mimulus guttatus mgf020556m I 0.859
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.859
Cla007391 Citrullus lanatus Cla007391 I 0.859
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.859
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.859
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.859
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.859
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.859
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.859
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
Bra000188 Brassica rapa Bra000188 I 0.859
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.859
Bo3g034980 Brassica oleracea Bo3g034980 I 0.859
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
LBD15 Arabidopsis thaliana AT2G40470 I 0.859
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.848
TCM_042262 Theobroma cacao TCM_042262 I 0.848
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.848
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.848
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.848
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.848
TCM_045438 Theobroma cacao TCM_045438 I 0.848
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.848
Pm000277 Prunus mume Pm000277 I 0.848
29729.m002335 Ricinus communis 29729.m002335 I 0.848
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.848
Ca_15642 Cicer arietinum Ca_15642 I 0.848
Ca_04126 Cicer arietinum Ca_04126 I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.848
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.848
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.848
PK17217.1 Cannabis sativa PK17217.1 I 0.848
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.848
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.838
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.838
OBART05G04570 Oryza barthii OBART05G04570 I 0.838
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.838
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.838
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.838
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.838
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.838
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.838
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.838
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.838
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.838
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.838
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.838
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.838
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.838
OS05G0165450 Oryza sativa OS05G0165450 I 0.838
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.838
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.838
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.838
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.828
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.828
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.828
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.828
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.828
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.828
Bo4g012620 Brassica oleracea Bo4g012620 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
Bra004572 Brassica rapa Bra004572 I 0.828
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.818
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.818
MDP0000278334 Malus domestica MDP0000278334 I 0.818
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.818
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.818
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.818
F775_52636 Aegilops tauschii F775_52636 I 0.818
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.818
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.818
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.818
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.818
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.818
OS01G0825000 Oryza sativa OS01G0825000 I 0.818
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.818
OBART01G35680 Oryza barthii OBART01G35680 I 0.818
OB01G44400 Oryza brachyantha OB01G44400 I 0.818
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.818
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.818
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.818
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.818
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.818
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.818
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.818
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.818
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.818
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.818
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.818
F775_25790 Aegilops tauschii F775_25790 I 0.808
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.808
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.808
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.808
Si004575m.g Setaria italica Si004575m.g I 0.808
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.808
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.798
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.798
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.798
Ca_12420 Cicer arietinum Ca_12420 I 0.798
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.798
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.798
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.798
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.788
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.788
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.788
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.778
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.778
OB05G14280 Oryza brachyantha OB05G14280 I 0.778
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.778
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.778
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.758
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707