Cagra.0824s0026 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.0824s0026 T246714_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.747 0.747
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0824s0026.1.p LOB 14 112

Links

Other LOB family TFs
Other Capsella grandiflora TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.960
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.949
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.939
LBD3 Arabidopsis thaliana AT1G16530 I 0.929
Bo8g105450 Brassica oleracea Bo8g105450 I 0.919
Bra026716 Brassica rapa Bra026716 I 0.919
Bra026042 Brassica rapa Bra026042 I 0.899
Bo5g021980 Brassica oleracea Bo5g021980 I 0.889
MDP0000268890 Malus domestica MDP0000268890 I 0.808
MDP0000284409 Malus domestica MDP0000284409 I 0.808
Pm011040 Prunus mume Pm011040 I 0.808
PK11564.1 Cannabis sativa PK11564.1 I 0.808
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.808
TCM_032557 Theobroma cacao TCM_032557 I 0.798
Cla013678 Citrullus lanatus Cla013678 I 0.798
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.798
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.798
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.798
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.798
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.798
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.798
30169.m006340 Ricinus communis 30169.m006340 I 0.798
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.798
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.788
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.788
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.788
MDP0000121203 Malus domestica MDP0000121203 I 0.788
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.788
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.788
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.788
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.788
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.788
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.788
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.788
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.788
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.788
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.788
Ca_13575 Cicer arietinum Ca_13575 I 0.788
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.788
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.788
TCM_029315 Theobroma cacao TCM_029315 I 0.788
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.778
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.778
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.778
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.778
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.778
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.778
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.778
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.778
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.778
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.778
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.778
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.778
Ca_06548 Cicer arietinum Ca_06548 I 0.778
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.768
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.768
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.768
mgf026046m Mimulus guttatus mgf026046m I 0.768
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.768
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.768
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.768
mgf022958m Mimulus guttatus mgf022958m I 0.758
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.758
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.758
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.758
PK24688.1 Cannabis sativa PK24688.1 I 0.758
Cla009336 Citrullus lanatus Cla009336 I 0.758
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.758
Bra021612 Brassica rapa Bra021612 I 0.758
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.758
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.758
Bo4g170770 Brassica oleracea Bo4g170770 I 0.758
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.758
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.758
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.758
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.758
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.758
LBD4 Arabidopsis thaliana AT1G31320 D 0.747
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.747
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.747
Bra018335 Brassica rapa Bra018335 I 0.747
Bra014907 Brassica rapa Bra014907 I 0.747
Bo7g041000 Brassica oleracea Bo7g041000 I 0.747
Bo4g059700 Brassica oleracea Bo4g059700 I 0.747
LBD12 Arabidopsis thaliana AT2G30130 I 0.747
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.747
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.747
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.747
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.747
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.747
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.747
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.747
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.747
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.747
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.747
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.747
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.737
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.737
MDP0000861160 Malus domestica MDP0000861160 I 0.737
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.737
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.737
mgf018189m Mimulus guttatus mgf018189m I 0.737
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.737
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.737
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.737
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.737
Cla005598 Citrullus lanatus Cla005598 I 0.737
29729.m002278 Ricinus communis 29729.m002278 I 0.737
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.737
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.737
Ca_12450 Cicer arietinum Ca_12450 I 0.737
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.737
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.737
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.737
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.737
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.737
MDP0000265429 Malus domestica MDP0000265429 I 0.737
Si037583m.g Setaria italica Si037583m.g I 0.737
TCM_042447 Theobroma cacao TCM_042447 I 0.737
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.737
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.737
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.737
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.737
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.737
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.737
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.737
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.737
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.737
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.727
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.727
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.727
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.727
Bo3g024350 Brassica oleracea Bo3g024350 I 0.727
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.727
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.727
Bra022780 Brassica rapa Bra022780 I 0.727
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.727
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.727
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.727
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.727
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.727
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.727
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.727
TCM_042212 Theobroma cacao TCM_042212 I 0.727
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.727
Cla007354 Citrullus lanatus Cla007354 I 0.727
Ca_08998 Cicer arietinum Ca_08998 I 0.727
Pm000193 Prunus mume Pm000193 I 0.727
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.727
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.727
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.727
Pm018982 Prunus mume Pm018982 I 0.727
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.727
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.717
Si026864m.g Setaria italica Si026864m.g I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.717
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.717
OB05G20740 Oryza brachyantha OB05G20740 I 0.717
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.717
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.717
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.717
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.717
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.717
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.717
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.717
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.717
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.717
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.717
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.717
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.717
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.717
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
OBART05G12620 Oryza barthii OBART05G12620 I 0.717
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.717
MDP0000194766 Malus domestica MDP0000194766 I 0.717
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.717
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.717
OS05G0346800 Oryza sativa OS05G0346800 I 0.717
Ca_13388 Cicer arietinum Ca_13388 I 0.717
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.717
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.717
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.717
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.717
mgf019461m Mimulus guttatus mgf019461m I 0.717
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.717
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.717
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.717
MDP0000155138 Malus domestica MDP0000155138 I 0.717
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.717
Si024229m.g Setaria italica Si024229m.g I 0.717
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.707
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.707
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.707
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.707
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
Cla013598 Citrullus lanatus Cla013598 I 0.707
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.707
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.707
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.707
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.707
OBART03G28270 Oryza barthii OBART03G28270 I 0.705
PK18922.1 Cannabis sativa PK18922.1 I 0.702