Cagra.1261s0013 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.1261s0013 T246721_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.778 0.778
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.778 0.778
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.758 0.758
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.758 0.758
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.707 0.707
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1261s0013.1.p LOB 11 110

Links

Other LOB family TFs
Other Capsella grandiflora TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.990
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.990
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.939
LBD31 Arabidopsis thaliana AT4G00210 I 0.929
Bra037322 Brassica rapa Bra037322 I 0.869
Bo9g002150 Brassica oleracea Bo9g002150 I 0.869
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.859
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.848
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.848
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.838
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.838
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.838
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.838
Ca_19598 Cicer arietinum Ca_19598 I 0.838
PK25573.1 Cannabis sativa PK25573.1 I 0.838
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.835
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.828
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.828
MDP0000429067 Malus domestica MDP0000429067 I 0.828
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.828
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.828
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.828
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.828
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.828
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.828
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.818
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.818
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.818
Pm017935 Prunus mume Pm017935 I 0.818
TCM_005497 Theobroma cacao TCM_005497 I 0.818
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.818
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.818
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.818
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.814
OS03G0246900 Oryza sativa OS03G0246900 I 0.808
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.808
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.808
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.808
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.808
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.808
OBART03G10450 Oryza barthii OBART03G10450 I 0.808
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.808
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.808
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.808
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.808
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.808
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.808
mgf020735m Mimulus guttatus mgf020735m I 0.808
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.808
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.808
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.800
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.798
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.798
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.798
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
Cla007069 Citrullus lanatus Cla007069 I 0.798
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.798
30174.m008897 Ricinus communis 30174.m008897 I 0.798
30174.m008898 Ricinus communis 30174.m008898 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.798
OB10G12360 Oryza brachyantha OB10G12360 I 0.798
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.798
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.798
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.788
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.788
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.788
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.788
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.788
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.788
Pm017936 Prunus mume Pm017936 I 0.788
Cla007068 Citrullus lanatus Cla007068 I 0.788
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.788
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.788
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.788
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.788
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.788
Ca_20429 Cicer arietinum Ca_20429 I 0.787
OB03G20590 Oryza brachyantha OB03G20590 I 0.780
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.778
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.778
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.778
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.778
LBD19 Arabidopsis thaliana AT2G45410 D 0.778
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.778
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.778
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.778
MDP0000254224 Malus domestica MDP0000254224 I 0.772
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.769
Bo4g024610 Brassica oleracea Bo4g024610 I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.768
Bra040311 Brassica rapa Bra040311 I 0.768
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.768
Bra040312 Brassica rapa Bra040312 I 0.768
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.768
Bo4g195520 Brassica oleracea Bo4g195520 I 0.768
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.768
mgf006429m Mimulus guttatus mgf006429m I 0.768
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.767
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.767
TCM_005496 Theobroma cacao TCM_005496 I 0.761
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.758
LBD18 Arabidopsis thaliana AT2G45420 D 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
Bra004908 Brassica rapa Bra004908 I 0.758
Ca_20428 Cicer arietinum Ca_20428 I 0.758
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.758
Pm028642 Prunus mume Pm028642 I 0.758
Bo4g024620 Brassica oleracea Bo4g024620 I 0.758
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.758
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.758
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.758
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.758
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.758
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.758
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.758
Bra004910 Brassica rapa Bra004910 I 0.758
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.758
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.758
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.755
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.755
Bra001087 Brassica rapa Bra001087 I 0.750
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.747
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.747
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.747
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.747
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
Cla002965 Citrullus lanatus Cla002965 I 0.747
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
Bo1g153580 Brassica oleracea Bo1g153580 I 0.747
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.747
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.747
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.747
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.747
Bra036436 Brassica rapa Bra036436 I 0.747
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.747
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.747
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.747
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.747
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.747
Bo4g195510 Brassica oleracea Bo4g195510 I 0.742
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.737
TCM_025849 Theobroma cacao TCM_025849 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
MDP0000322059 Malus domestica MDP0000322059 I 0.737
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.737
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.736
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.736
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.733
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.727
30072.m000955 Ricinus communis 30072.m000955 I 0.727
Ca_12213 Cicer arietinum Ca_12213 I 0.727
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.727
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.727
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.722
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.717
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.717
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
Bra037323 Brassica rapa Bra037323 I 0.717
Cla015094 Citrullus lanatus Cla015094 I 0.717
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.717
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.717
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.714
Ca_19597 Cicer arietinum Ca_19597 I 0.710
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.708
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.707
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.707
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.707
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
TCM_042730 Theobroma cacao TCM_042730 I 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
28428.m000040 Ricinus communis 28428.m000040 I 0.707
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
Cla021625 Citrullus lanatus Cla021625 I 0.707
Bra008514 Brassica rapa Bra008514 I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.707
Bo2g097560 Brassica oleracea Bo2g097560 I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
PK00972.1 Cannabis sativa PK00972.1 I 0.700