CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.2117s0054
(
Capsella grandiflora
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Cagra.2117s0054
T246732_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2117s0054.1.p
LOB
8
107
SCGACKFLRRKCTCDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLQLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVSLQEEIEFLGS
Links
Other
LOB
family TFs
Other
Capsella grandiflora
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10002921m.g
Capsella rubella
Carubv10002921m.g
N
1.000
Bostr.13129s0366
Boechera stricta
Bostr.13129s0366
N
0.960
LBD33
Arabidopsis lyrata
Al_scaffold_0006_527
N
0.960
LBD33
Arabidopsis thaliana
AT5G06080
N
0.929
Bo9g176580
Brassica oleracea
Bo9g176580
N
0.899
Bra009161
Brassica rapa
Bra009161
N
0.899
Thhalv10015772m.g
Eutrema salsugineum
Thhalv10015772m.g
N
0.823
LBD33
Vitis vinifera
VIT_13s0019g02060
N
0.818
Eucgr.G02955
Eucalyptus grandis
Eucgr.G02955
I
0.818
TCM_042730
Theobroma cacao
TCM_042730
I
0.798
POPTR_0010s20800
Populus trichocarpa
POPTR_0010s20800
I
0.798
SapurV1A.0281s0190
Salix purpurea
SapurV1A.0281s0190
I
0.798
Cucsa.165150
Cucumis sativus
Cucsa.165150
N
0.788
evm.TU.supercontig_1.438
Carica papaya
evm.TU.supercontig_1.438
I
0.788
30143.m001171
Ricinus communis
30143.m001171
N
0.788
GLYMA14G07260
Glycine max
GLYMA14G07260
N
0.788
Ciclev10033354m.g
Citrus clementina
Ciclev10033354m.g
I
0.778
MTR_5g080470
Medicago truncatula
MTR_5g080470
N
0.778
MDP0000123797
Malus domestica
MDP0000123797
N
0.778
PRUPE_ppa018815mg
Prunus persica
PRUPE_ppa018815mg
N
0.778
Cla004059
Citrullus lanatus
Cla004059
N
0.778
Ca_16122
Cicer arietinum
Ca_16122
N
0.778
Pm018835
Prunus mume
Pm018835
N
0.778
LjSGA_054888.1
Lotus japonicus
LjSGA_054888.1
I
0.773
MDP0000133936
Malus domestica
MDP0000133936
N
0.768
Gorai.011G267700
Gossypium raimondii
Gorai.011G267700
I
0.768
cassava34632.m1
Manihot esculenta
cassava34632.m1
N
0.768
GLYMA02G41710
Glycine max
GLYMA02G41710
N
0.758
cassava15468.m1
Manihot esculenta
cassava15468.m1
I
0.755
gene26330-v1.0-hybrid
Fragaria vesca
gene26330-v1.0-hybrid
N
0.747
Ca_19597
Cicer arietinum
Ca_19597
I
0.742
PK00972.1
Cannabis sativa
PK00972.1
I
0.733
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.717
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.709
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.700