Carubv10002489m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10002489m.g T246748_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.768 0.768
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.768 0.768
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.747 0.747
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.747 0.747
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.707 0.707
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002489m LOB 11 110

Links

Other LOB family TFs
Other Capsella rubella TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.990
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.980
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.929
LBD31 Arabidopsis thaliana AT4G00210 I 0.919
Bra037322 Brassica rapa Bra037322 I 0.869
Bo9g002150 Brassica oleracea Bo9g002150 I 0.869
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.848
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.838
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.838
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.838
Ca_19598 Cicer arietinum Ca_19598 I 0.828
PK25573.1 Cannabis sativa PK25573.1 I 0.828
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.828
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.828
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.828
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.828
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.818
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.818
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.818
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.818
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
MDP0000429067 Malus domestica MDP0000429067 I 0.818
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.818
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.818
Pm017935 Prunus mume Pm017935 I 0.808
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.808
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.808
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.808
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.808
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.808
TCM_005497 Theobroma cacao TCM_005497 I 0.808
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.808
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.798
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.798
OBART03G10450 Oryza barthii OBART03G10450 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.798
OB10G12360 Oryza brachyantha OB10G12360 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
OS03G0246900 Oryza sativa OS03G0246900 I 0.798
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.798
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.798
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.798
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.798
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.798
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.798
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.798
mgf020735m Mimulus guttatus mgf020735m I 0.798
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.798
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.788
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.788
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.788
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.788
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.788
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.788
30174.m008898 Ricinus communis 30174.m008898 I 0.788
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.788
30174.m008897 Ricinus communis 30174.m008897 I 0.788
Cla007069 Citrullus lanatus Cla007069 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.778
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.778
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.778
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.778
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
Cla007068 Citrullus lanatus Cla007068 I 0.778
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.778
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.778
Pm017936 Prunus mume Pm017936 I 0.778
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.768
LBD19 Arabidopsis thaliana AT2G45410 D 0.768
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.768
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.768
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.768
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.768
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.758
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.758
Bra040311 Brassica rapa Bra040311 I 0.758
Bo4g024610 Brassica oleracea Bo4g024610 I 0.758
Bo4g195520 Brassica oleracea Bo4g195520 I 0.758
Bra040312 Brassica rapa Bra040312 I 0.758
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.758
mgf006429m Mimulus guttatus mgf006429m I 0.758
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.758
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.755
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.755
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.747
Bo4g024620 Brassica oleracea Bo4g024620 I 0.747
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.747
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.747
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
Bra004910 Brassica rapa Bra004910 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.747
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.747
Ca_20428 Cicer arietinum Ca_20428 I 0.747
LBD18 Arabidopsis thaliana AT2G45420 D 0.747
Pm028642 Prunus mume Pm028642 I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.747
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.747
Bra004908 Brassica rapa Bra004908 I 0.747
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.747
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.747
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.747
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.747
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.737
MDP0000322059 Malus domestica MDP0000322059 I 0.737
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.737
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.737
LBD20 Arabidopsis thaliana AT3G03760 I 0.737
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.737
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
Cla002965 Citrullus lanatus Cla002965 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
Bra036436 Brassica rapa Bra036436 I 0.737
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.737
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.737
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.727
TCM_025849 Theobroma cacao TCM_025849 I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.727
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.727
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.727
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
OB03G20590 Oryza brachyantha OB03G20590 I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.717
Bra037323 Brassica rapa Bra037323 I 0.717
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.717
Cla021625 Citrullus lanatus Cla021625 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
30072.m000955 Ricinus communis 30072.m000955 I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
Bra008514 Brassica rapa Bra008514 I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.707
Bo2g097560 Brassica oleracea Bo2g097560 I 0.707
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
TCM_042730 Theobroma cacao TCM_042730 I 0.707
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.707
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.707
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.707
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.707
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.707
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.707
Cla015094 Citrullus lanatus Cla015094 I 0.707
Ca_20429 Cicer arietinum Ca_20429 I 0.707
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.707
TCM_005496 Theobroma cacao TCM_005496 I 0.707