Carubv10002921m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10002921m.g T246750_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002921m LOB 8 107

Links

Other LOB family TFs
Other Capsella rubella TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 1.000
Bostr.13129s0366 Boechera stricta Bostr.13129s0366 N 0.960
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.960
LBD33 Arabidopsis thaliana AT5G06080 N 0.929
Bo9g176580 Brassica oleracea Bo9g176580 N 0.899
Bra009161 Brassica rapa Bra009161 N 0.899
Thhalv10015772m.g Eutrema salsugineum Thhalv10015772m.g N 0.823
LBD33 Vitis vinifera VIT_13s0019g02060 N 0.818
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.818
TCM_042730 Theobroma cacao TCM_042730 I 0.798
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.798
SapurV1A.0281s0190 Salix purpurea SapurV1A.0281s0190 I 0.798
Cucsa.165150 Cucumis sativus Cucsa.165150 N 0.788
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.788
30143.m001171 Ricinus communis 30143.m001171 N 0.788
GLYMA14G07260 Glycine max GLYMA14G07260 N 0.788
Ciclev10033354m.g Citrus clementina Ciclev10033354m.g I 0.778
MTR_5g080470 Medicago truncatula MTR_5g080470 N 0.778
MDP0000123797 Malus domestica MDP0000123797 N 0.778
PRUPE_ppa018815mg Prunus persica PRUPE_ppa018815mg N 0.778
Cla004059 Citrullus lanatus Cla004059 N 0.778
Ca_16122 Cicer arietinum Ca_16122 N 0.778
Pm018835 Prunus mume Pm018835 N 0.778
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I 0.773
MDP0000133936 Malus domestica MDP0000133936 N 0.768
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.768
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.768
GLYMA02G41710 Glycine max GLYMA02G41710 N 0.758
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.755
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.747
Ca_19597 Cicer arietinum Ca_19597 I 0.742
PK00972.1 Cannabis sativa PK00972.1 I 0.733
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.709
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.700