Carubv10010390m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10010390m.g T246756_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010390m LOB 30 128

Links

Other LOB family TFs
Other Capsella rubella TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.990
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.970
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.949
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.949
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.949
LBD11 Arabidopsis thaliana AT2G28500 N 0.949
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.939
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.939
Bo01039s010 Brassica oleracea Bo01039s010 N 0.939
Bra035698 Brassica rapa Bra035698 N 0.929
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.929
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.929
Bra011942 Brassica rapa Bra011942 N 0.929
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.929
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.929
Bo4g165420 Brassica oleracea Bo4g165420 N 0.929
Pm000938 Prunus mume Pm000938 I 0.919
TCM_041094 Theobroma cacao TCM_041094 I 0.919
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.919
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.919
Bo5g008590 Brassica oleracea Bo5g008590 N 0.919
30111.m000703 Ricinus communis 30111.m000703 I 0.919
PK27389.1 Cannabis sativa PK27389.1 I 0.919
Bra018675 Brassica rapa Bra018675 N 0.919
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.919
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.909
Bo3g040220 Brassica oleracea Bo3g040220 N 0.909
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.909
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.909
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.909
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.909
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.909
Bra000491 Brassica rapa Bra000491 N 0.909
Ca_14605 Cicer arietinum Ca_14605 I 0.909
MDP0000319331 Malus domestica MDP0000319331 I 0.909
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.899
MDP0000318244 Malus domestica MDP0000318244 I 0.899
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.899
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.899
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.899
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.899
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.899
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.899
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.899
MDP0000218986 Malus domestica MDP0000218986 I 0.899
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.899
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.899
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.889
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.889
Bo8g112780 Brassica oleracea Bo8g112780 N 0.889
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.889
Ca_04287 Cicer arietinum Ca_04287 I 0.889
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.889
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.889
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.889
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.889
PK23777.1 Cannabis sativa PK23777.1 I 0.889
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.889
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.889
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.879
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.879
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.879
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.879
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.879
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.879
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.879
Bra031599 Brassica rapa Bra031599 N 0.879
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.869
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.869
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.869
Cla000556 Citrullus lanatus Cla000556 I 0.869
TCM_043081 Theobroma cacao TCM_043081 I 0.869
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.869
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.869
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.868
Pm018585 Prunus mume Pm018585 I 0.859
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.859
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.859
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.859
Cla020379 Citrullus lanatus Cla020379 I 0.859
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.848
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.848
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.848
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.848
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.848
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.848
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.846
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.838
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.838
mgf015666m Mimulus guttatus mgf015666m N 0.838
MDP0000123013 Malus domestica MDP0000123013 I 0.838
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.838
MDP0000879799 Malus domestica MDP0000879799 N 0.838
MDP0000151784 Malus domestica MDP0000151784 I 0.838
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.828
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.828
Cla005134 Citrullus lanatus Cla005134 N 0.828
Ca_02507 Cicer arietinum Ca_02507 N 0.828
MDP0000822986 Malus domestica MDP0000822986 I 0.828
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.828
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.818
OB05G11740 Oryza brachyantha OB05G11740 I 0.818
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.818
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.818
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.818
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.818
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.812
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.809
mgf022524m Mimulus guttatus mgf022524m N 0.808
mgf019622m Mimulus guttatus mgf019622m N 0.808
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.808
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.808
Si037280m.g Setaria italica Si037280m.g N 0.808
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.808
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.808
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.808
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.808
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.808
OBART05G01640 Oryza barthii OBART05G01640 N 0.808
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.798
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.798
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.798
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.798
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.798
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.798
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.798
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.798
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.798
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.798
OBART03G13260 Oryza barthii OBART03G13260 N 0.798
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.798
Si024430m.g Setaria italica Si024430m.g N 0.798
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.798
OS03G0287400 Oryza sativa OS03G0287400 N 0.798
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.798
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.796
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.795
PK17019.1 Cannabis sativa PK17019.1 I 0.794
OB03G23270 Oryza brachyantha OB03G23270 N 0.788
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.788
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.788
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.788
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.783
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.778
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.778
F775_02335 Aegilops tauschii F775_02335 N 0.778
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.768
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.768
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.768
Cla005133 Citrullus lanatus Cla005133 N 0.768
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.758
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.758
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.758
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.758
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.747
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.747
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.737
OS05G0123000 Oryza sativa OS05G0123000 I 0.737
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.737
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.737
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.736
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.727
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.727
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.727
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.727
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.727
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.727
mgf018189m Mimulus guttatus mgf018189m I 0.727
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.727
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.727
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.727
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.720
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.717
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.717
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.717
Pm018982 Prunus mume Pm018982 I 0.717
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.717
F775_08326 Aegilops tauschii F775_08326 I 0.717
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.717
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.712
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.712
cassava4159.m1 Manihot esculenta cassava4159.m1 N 0.712
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.709
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.707
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.707
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.707
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
29729.m002278 Ricinus communis 29729.m002278 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.707
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.707
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.707
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.707
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.707
TCM_042447 Theobroma cacao TCM_042447 I 0.707
TCM_042212 Theobroma cacao TCM_042212 I 0.707
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.700