Carubv10018619m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10018619m.g T246773_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.818 0.818
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.818 0.818
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018619m LOB 11 110

Links

Other LOB family TFs
Other Capsella rubella TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0686s0035 Capsella grandiflora Cagra.0686s0035 I 0.990
Thhalv10006423m.g Eutrema salsugineum Thhalv10006423m.g I 0.909
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.828
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.818
Bra004693 Brassica rapa Bra004693 I 0.818
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.818
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.818
Bo4g191530 Brassica oleracea Bo4g191530 I 0.818
LBD16 Arabidopsis thaliana AT2G42430 D 0.818
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.818
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.818
Bo4g016000 Brassica oleracea Bo4g016000 I 0.818
Pm020629 Prunus mume Pm020629 I 0.808
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.808
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.808
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.808
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.808
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.808
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.808
Bra016877 Brassica rapa Bra016877 I 0.808
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.808
Cla006088 Citrullus lanatus Cla006088 I 0.808
Bra000257 Brassica rapa Bra000257 I 0.798
MDP0000131964 Malus domestica MDP0000131964 I 0.798
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.798
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.798
Bo3g036030 Brassica oleracea Bo3g036030 I 0.798
MDP0000145761 Malus domestica MDP0000145761 I 0.798
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.798
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.798
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.798
TCM_004106 Theobroma cacao TCM_004106 I 0.798
29883.m002035 Ricinus communis 29883.m002035 I 0.798
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.798
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.788
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.788
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.788
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.788
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.788
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.788
Ca_12213 Cicer arietinum Ca_12213 I 0.788
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.778
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.778
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.778
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.768
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.768
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.768
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.768
Bo3g036000 Brassica oleracea Bo3g036000 I 0.763
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.758
OB02G44330 Oryza brachyantha OB02G44330 I 0.758
Si019578m.g Setaria italica Si019578m.g I 0.747
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.747
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.747
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.747
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.747
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.747
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.747
OS02G0820500 Oryza sativa OS02G0820500 I 0.747
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.747
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.747
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.747
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.747
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.747
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.747
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.737
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.737
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.737
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.737
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.727
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.727
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.727
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.727
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.727
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.727
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.727
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.727
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.727
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.727
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.727
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.727
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.727
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.727
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.717
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.717
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.717
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.717
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
OBART08G23860 Oryza barthii OBART08G23860 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
OB08G30680 Oryza brachyantha OB08G30680 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.717
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.717
OS08G0563400 Oryza sativa OS08G0563400 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.707
30174.m008898 Ricinus communis 30174.m008898 I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.707
Cla007068 Citrullus lanatus Cla007068 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.707
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.707
28428.m000040 Ricinus communis 28428.m000040 I 0.707
mgf020773m Mimulus guttatus mgf020773m I 0.707
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
Pm017936 Prunus mume Pm017936 I 0.707
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.707
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.707
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.707
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.700