Carubv10024002m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10024002m.g T246782_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.859 0.859
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.859 0.859
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024002m LOB 45 143

Links

Other LOB family TFs
Other Capsella rubella TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 1.000
LBD15 Arabidopsis thaliana AT2G40470 I 1.000
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 1.000
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 1.000
Bo3g034980 Brassica oleracea Bo3g034980 I 0.990
Bra000188 Brassica rapa Bra000188 I 0.990
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.990
Bo4g190210 Brassica oleracea Bo4g190210 I 0.980
Bra004572 Brassica rapa Bra004572 I 0.970
Bra016992 Brassica rapa Bra016992 I 0.970
Bo4g012620 Brassica oleracea Bo4g012620 I 0.970
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.960
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.960
TCM_045438 Theobroma cacao TCM_045438 I 0.960
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.960
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.960
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.960
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.960
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.960
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.960
PK17217.1 Cannabis sativa PK17217.1 I 0.960
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.949
29729.m002335 Ricinus communis 29729.m002335 I 0.949
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.949
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.949
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.949
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.939
Cla007391 Citrullus lanatus Cla007391 I 0.939
Ca_04126 Cicer arietinum Ca_04126 I 0.939
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.939
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.929
MDP0000278334 Malus domestica MDP0000278334 I 0.929
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.929
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
Bo4g190140 Brassica oleracea Bo4g190140 I 0.921
OB05G14280 Oryza brachyantha OB05G14280 I 0.920
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.919
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.919
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.919
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.919
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.919
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
Pm019028 Prunus mume Pm019028 I 0.909
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
29957.m001411 Ricinus communis 29957.m001411 I 0.909
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.904
MDP0000167580 Malus domestica MDP0000167580 I 0.900
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.899
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.899
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.899
TCM_042262 Theobroma cacao TCM_042262 I 0.899
OS05G0165450 Oryza sativa OS05G0165450 I 0.899
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.899
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.899
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.899
OBART05G04570 Oryza barthii OBART05G04570 I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.899
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.899
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.899
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
Ca_12420 Cicer arietinum Ca_12420 I 0.889
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.889
Si012018m.g Setaria italica Si012018m.g I 0.889
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.889
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.882
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.879
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
F775_52636 Aegilops tauschii F775_52636 I 0.879
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.879
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.879
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.879
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.879
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.869
Bo4g172950 Brassica oleracea Bo4g172950 I 0.869
Si004575m.g Setaria italica Si004575m.g I 0.869
F775_25790 Aegilops tauschii F775_25790 I 0.869
Bra021627 Brassica rapa Bra021627 I 0.869
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.869
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.869
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.869
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.869
OS01G0825000 Oryza sativa OS01G0825000 I 0.869
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.869
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.869
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.869
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.869
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.869
OB01G44400 Oryza brachyantha OB01G44400 I 0.869
OBART01G35680 Oryza barthii OBART01G35680 I 0.869
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.869
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.869
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.869
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.859
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.859
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
LBD13 Arabidopsis thaliana AT2G30340 D 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.859
Bra018320 Brassica rapa Bra018320 I 0.859
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.859
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.859
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.859
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.859
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
Bo4g059520 Brassica oleracea Bo4g059520 I 0.859
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.859
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.848
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.848
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
Pm000277 Prunus mume Pm000277 I 0.838
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.838
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
PK03716.1 Cannabis sativa PK03716.1 I 0.824
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.818
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.814
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.778
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.763
Cla006731 Citrullus lanatus Cla006731 I 0.745
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.745
mgf026046m Mimulus guttatus mgf026046m I 0.737
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.737
PK17019.1 Cannabis sativa PK17019.1 I 0.735
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.727
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
Bra022780 Brassica rapa Bra022780 I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
Bo3g024350 Brassica oleracea Bo3g024350 I 0.717
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
Si026864m.g Setaria italica Si026864m.g I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.708
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707