Carubv10024870m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10024870m.g T246783_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.980 0.980
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.980 0.980
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024870m LOB 54 162

Links

Other LOB family TFs
Other Capsella rubella TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.990
Bra018320 Brassica rapa Bra018320 I 0.980
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.980
Bo4g059520 Brassica oleracea Bo4g059520 I 0.980
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.980
LBD13 Arabidopsis thaliana AT2G30340 D 0.980
Bra021627 Brassica rapa Bra021627 I 0.970
Bo4g172950 Brassica oleracea Bo4g172950 I 0.970
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.970
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.859
29957.m001411 Ricinus communis 29957.m001411 I 0.859
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.859
Bra016992 Brassica rapa Bra016992 I 0.859
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.848
Cla007391 Citrullus lanatus Cla007391 I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.848
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.848
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.848
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
LBD15 Arabidopsis thaliana AT2G40470 I 0.848
Bo4g190210 Brassica oleracea Bo4g190210 I 0.848
Bra000188 Brassica rapa Bra000188 I 0.848
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.848
Bo3g034980 Brassica oleracea Bo3g034980 I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.838
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.838
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.838
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.838
TCM_042262 Theobroma cacao TCM_042262 I 0.838
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.838
TCM_045438 Theobroma cacao TCM_045438 I 0.838
Pm000277 Prunus mume Pm000277 I 0.838
29729.m002335 Ricinus communis 29729.m002335 I 0.838
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.838
Ca_15642 Cicer arietinum Ca_15642 I 0.838
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.838
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.838
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.838
Ca_04126 Cicer arietinum Ca_04126 I 0.838
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.838
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.838
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.838
PK17217.1 Cannabis sativa PK17217.1 I 0.838
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.838
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.838
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.828
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.828
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.828
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.828
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.828
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.828
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.828
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.828
OBART05G04570 Oryza barthii OBART05G04570 I 0.828
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.828
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.828
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.828
OS05G0165450 Oryza sativa OS05G0165450 I 0.828
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.828
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.828
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.828
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.828
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.818
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.818
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.818
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
Bra004572 Brassica rapa Bra004572 I 0.818
Bo4g012620 Brassica oleracea Bo4g012620 I 0.818
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.818
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.818
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.818
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.818
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.818
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.818
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.808
F775_52636 Aegilops tauschii F775_52636 I 0.808
MDP0000278334 Malus domestica MDP0000278334 I 0.808
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.808
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.808
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.808
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.808
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.808
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.808
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.808
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.808
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.808
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.808
OBART01G35680 Oryza barthii OBART01G35680 I 0.808
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.808
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.808
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.808
OB01G44400 Oryza brachyantha OB01G44400 I 0.808
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.808
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.808
OS01G0825000 Oryza sativa OS01G0825000 I 0.808
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.808
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.808
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.808
Si004575m.g Setaria italica Si004575m.g I 0.798
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.798
F775_25790 Aegilops tauschii F775_25790 I 0.798
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.798
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.798
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.798
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.798
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.788
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.788
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.788
Ca_12420 Cicer arietinum Ca_12420 I 0.788
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.788
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.788
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.788
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.778
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.778
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.778
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.768
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.768
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.768
OB05G14280 Oryza brachyantha OB05G14280 I 0.768
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.747