Carubv10025477m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10025477m.g T246786_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.980 0.980
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.980 0.980
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.737 0.737
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.737 0.737
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.717 0.717
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025477m LOB 17 116

Links

Other LOB family TFs
Other Capsella rubella TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 1.000
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.990
LBD19 Arabidopsis thaliana AT2G45410 D 0.980
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.960
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.919
Bo4g024610 Brassica oleracea Bo4g024610 I 0.919
Bra004908 Brassica rapa Bra004908 I 0.909
Bra040312 Brassica rapa Bra040312 I 0.889
Bo4g195510 Brassica oleracea Bo4g195510 I 0.865
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.852
PK25573.1 Cannabis sativa PK25573.1 I 0.848
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.838
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.838
MDP0000429067 Malus domestica MDP0000429067 I 0.828
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.828
30174.m008897 Ricinus communis 30174.m008897 I 0.828
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.828
Pm017935 Prunus mume Pm017935 I 0.828
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.828
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.818
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.818
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.818
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.818
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.808
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.808
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.808
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.808
TCM_005497 Theobroma cacao TCM_005497 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.798
mgf020735m Mimulus guttatus mgf020735m I 0.798
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.798
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.798
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.798
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.791
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.791
Ca_19598 Cicer arietinum Ca_19598 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.788
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.788
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.778
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.778
OBART03G10450 Oryza barthii OBART03G10450 I 0.778
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.778
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.778
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
Cla007069 Citrullus lanatus Cla007069 I 0.778
30174.m008898 Ricinus communis 30174.m008898 I 0.778
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.778
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.778
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.778
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.778
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.778
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.778
OS03G0246900 Oryza sativa OS03G0246900 I 0.778
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.778
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.778
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.778
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.778
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.778
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.778
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.778
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.769
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.768
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.768
LBD31 Arabidopsis thaliana AT4G00210 I 0.768
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.768
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.768
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.768
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.768
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.768
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
Pm017936 Prunus mume Pm017936 I 0.768
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.768
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.768
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.767
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.767
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.766
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.758
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.758
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.758
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.758
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.758
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.758
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.758
MDP0000254224 Malus domestica MDP0000254224 I 0.750
Bra040311 Brassica rapa Bra040311 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.747
Bo9g002150 Brassica oleracea Bo9g002150 I 0.747
OB03G20590 Oryza brachyantha OB03G20590 I 0.747
OB10G12360 Oryza brachyantha OB10G12360 I 0.747
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.747
Bo4g195520 Brassica oleracea Bo4g195520 I 0.747
Bra037322 Brassica rapa Bra037322 I 0.747
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.740
TCM_005496 Theobroma cacao TCM_005496 I 0.739
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.734
Ca_20429 Cicer arietinum Ca_20429 I 0.730
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.727
OS10G0162600 Oryza sativa OS10G0162600 I 0.727
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.727
Bra004910 Brassica rapa Bra004910 I 0.727
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.727
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.727
Bo9g002160 Brassica oleracea Bo9g002160 I 0.727
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.727
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.727
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.727
Bra037323 Brassica rapa Bra037323 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.727
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.727
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.727
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.727
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.717
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.717
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.717
LBD30 Arabidopsis thaliana AT4G00220 D 0.717
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
MDP0000145761 Malus domestica MDP0000145761 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
OS08G0563400 Oryza sativa OS08G0563400 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.707
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Bra008514 Brassica rapa Bra008514 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
Bo2g097560 Brassica oleracea Bo2g097560 I 0.707
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.707
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.707
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.707
Pm028642 Prunus mume Pm028642 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.707
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
Bra001087 Brassica rapa Bra001087 I 0.706