Carubv10026811m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10026811m.g T246790_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.818 0.818
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026811m LOB 7 105

Links

Other LOB family TFs
Other Capsella rubella TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29676.m001633 Ricinus communis 29676.m001633 I 0.879
29929.m004500 Ricinus communis 29929.m004500 I 0.818
30147.m013890 Ricinus communis 30147.m013890 I 0.727
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.727
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.828
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.879
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.717
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.798
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.717
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.818
AS2 Vitis vinifera VIT_00s0340g00090 I 0.818
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.980
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.778
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.768
Bo2g051420 Brassica oleracea Bo2g051420 I 0.818
Bo2g167820 Brassica oleracea Bo2g167820 I 0.960
Bo3g104760 Brassica oleracea Bo3g104760 I 0.717
Bo4g151770 Brassica oleracea Bo4g151770 I 0.778
Bo7g064360 Brassica oleracea Bo7g064360 I 0.939
Bo7g085860 Brassica oleracea Bo7g085860 I 0.707
Bo9g008330 Brassica oleracea Bo9g008330 I 0.707
Bo9g017470 Brassica oleracea Bo9g017470 I 0.727
Bo9g021590 Brassica oleracea Bo9g021590 N 0.737
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 1.000
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.818
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.737
Bra012112 Brassica rapa Bra012112 I 0.939
Bra025294 Brassica rapa Bra025294 I 0.717
Bra032153 Brassica rapa Bra032153 I 0.778
Bra037142 Brassica rapa Bra037142 N 0.717
Bra038606 Brassica rapa Bra038606 I 0.717
Bra039072 Brassica rapa Bra039072 I 0.707
Bra039733 Brassica rapa Bra039733 I 0.818
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.758
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.737
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.758
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.768
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.818
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 1.000
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.758
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.717
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.707
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.818
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.758
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.717
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.818
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.838
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.899
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.727
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.909
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.879
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.727
Ca_02124 Cicer arietinum Ca_02124 I 0.788
Ca_02125 Cicer arietinum Ca_02125 I 0.798
Ca_07463 Cicer arietinum Ca_07463 I 0.717
Ca_08824 Cicer arietinum Ca_08824 I 0.727
Ca_09248 Cicer arietinum Ca_09248 N 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.838
Ca_18206 Cicer arietinum Ca_18206 N 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.788
Ca_24372 Cicer arietinum Ca_24372 I 0.707
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.727
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.838
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.828
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.919
Cla003499 Citrullus lanatus Cla003499 I 0.727
Cla005851 Citrullus lanatus Cla005851 I 0.808
Cla017388 Citrullus lanatus Cla017388 I 0.717
Cla019510 Citrullus lanatus Cla019510 I 0.727
Cla020438 Citrullus lanatus Cla020438 I 0.869
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.737
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.808
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.727
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.889
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.717
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.818
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.707
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.727
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.818
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.899
F775_20715 Aegilops tauschii F775_20715 I 0.768
F775_21760 Aegilops tauschii F775_21760 I 0.768
F775_25656 Aegilops tauschii F775_25656 I 0.727
F775_33210 Aegilops tauschii F775_33210 I 0.863
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.818
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.889
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.838
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.717
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.848
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.859
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.727
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.727
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.758
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.869
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.727
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.848
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.747
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.788
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.788
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.727
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.707
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.909
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.808
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.869
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.909
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.788
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.747
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.717
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.727
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.712
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.712
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.828
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.727
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.747
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
LBD10 Arabidopsis thaliana AT2G23660 I 0.758
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.758
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.707
LBD25 Arabidopsis thaliana AT3G27650 I 0.707
LBD36 Arabidopsis thaliana AT5G66870 I 0.970
LBD6 Oryza indica BGIOSGA004955 I 0.768
LBD6 Arabidopsis thaliana AT1G65620 D 0.818
LBD6 Oryza sativa OS01G0889400 I 0.768
LOB Arabidopsis thaliana AT5G63090 D 0.717
LOB Vitis vinifera VIT_17s0000g09010 I 0.727
LOB Arabidopsis lyrata scaffold_802995.1 I 0.717
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.727
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.768
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.778
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.879
Lus10006679.g Linum usitatissimum Lus10006679.g N 0.717
Lus10009337.g Linum usitatissimum Lus10009337.g I 0.768
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.798
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.838
Lus10019633.g Linum usitatissimum Lus10019633.g I 0.768
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.838
Lus10025840.g Linum usitatissimum Lus10025840.g N 0.707
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.717
Lus10038261.g Linum usitatissimum Lus10038261.g N 0.717
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.717
MDP0000130659 Malus domestica MDP0000130659 I 0.727
MDP0000197526 Malus domestica MDP0000197526 I 0.818
MDP0000254288 Malus domestica MDP0000254288 I 0.727
MDP0000273432 Malus domestica MDP0000273432 I 0.818
MDP0000310871 Malus domestica MDP0000310871 I 0.848
MDP0000562305 Malus domestica MDP0000562305 I 0.848
MDP0000643326 Malus domestica MDP0000643326 I 0.808
MDP0000777060 Malus domestica MDP0000777060 I 0.859
mgf004296m Mimulus guttatus mgf004296m I 0.828
mgf014755m Mimulus guttatus mgf014755m I 0.818
mgf024603m Mimulus guttatus mgf024603m I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.768
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.768
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.788
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.717
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.727
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.727
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.838
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.788
OB01G14220 Oryza brachyantha OB01G14220 I 0.727
OB01G48740 Oryza brachyantha OB01G48740 I 0.768
OB03G34080 Oryza brachyantha OB03G34080 I 0.768
OB05G24560 Oryza brachyantha OB05G24560 I 0.768
OBART01G04470 Oryza barthii OBART01G04470 I 0.727
OBART01G39990 Oryza barthii OBART01G39990 I 0.768
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.727
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.768
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.778
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.768
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.768
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.727
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.768
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.727
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.768
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.778
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.768
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.828
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.919
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.727
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.768
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.778
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.768
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.727
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.768
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.778
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.768
OS01G0169400 Oryza sativa OS01G0169400 I 0.727
OS03G0612400 Oryza sativa OS03G0612400 I 0.778
OS05G0417000 Oryza sativa OS05G0417000 I 0.768
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.788
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.727
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.788
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.747
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.758
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.778
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.778
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.788
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.727
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.808
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.707
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.848
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.707
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.859
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.879
PK18922.1 Cannabis sativa PK18922.1 I 0.877
PK21510.1 Cannabis sativa PK21510.1 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.739
PK29334.1 Cannabis sativa PK29334.1 I 0.734
Pm010483 Prunus mume Pm010483 I 0.838
Pm024312 Prunus mume Pm024312 I 0.727
Pm026450 Prunus mume Pm026450 I 0.899
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.889
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.909
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.808
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.808
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.727
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.727
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.838
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.727
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.899
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.818
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.737
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.808
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.808
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.899
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.909
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.788
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.909
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.717
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.747
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.727
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.788
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.747
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.747
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.747
Si002599m.g Setaria italica Si002599m.g I 0.788
Si002632m.g Setaria italica Si002632m.g I 0.727
Si024114m.g Setaria italica Si024114m.g I 0.747
Si026864m.g Setaria italica Si026864m.g I 0.717
Si036905m.g Setaria italica Si036905m.g I 0.768
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.879
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.707
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.828
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.808
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.717
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.818
TCM_000560 Theobroma cacao TCM_000560 I 0.919
TCM_012190 Theobroma cacao TCM_012190 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.818
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.758
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.970
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.717
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.818
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.768
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.768
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.785
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.768
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.778
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.778
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.737
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.747
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.758
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.870
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.869
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.869
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.808
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.818
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.808