Ciclev10002348m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10002348m.g T246793_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.828 0.828
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10002348m LOB 46 144

Links

Other LOB family TFs
Other Citrus clementina TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 1.000
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.919
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.889
Ca_15642 Cicer arietinum Ca_15642 I 0.889
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.889
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.889
TCM_045438 Theobroma cacao TCM_045438 I 0.889
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.889
TCM_042262 Theobroma cacao TCM_042262 I 0.889
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.889
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.879
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.879
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.879
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.879
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.879
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.879
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
29957.m001411 Ricinus communis 29957.m001411 I 0.879
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.869
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.869
29729.m002335 Ricinus communis 29729.m002335 I 0.869
mgf011471m Mimulus guttatus mgf011471m I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.869
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.869
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.869
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.869
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.869
PK17217.1 Cannabis sativa PK17217.1 I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
Pm000277 Prunus mume Pm000277 I 0.859
LBD15 Arabidopsis thaliana AT2G40470 I 0.859
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.859
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.859
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.859
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.859
MDP0000278334 Malus domestica MDP0000278334 I 0.859
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.859
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.859
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.859
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.859
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.848
Bra000188 Brassica rapa Bra000188 I 0.848
Ca_12420 Cicer arietinum Ca_12420 I 0.848
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.848
Bo3g034980 Brassica oleracea Bo3g034980 I 0.848
Ca_04126 Cicer arietinum Ca_04126 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.838
Bo4g012620 Brassica oleracea Bo4g012620 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.838
Bo4g190210 Brassica oleracea Bo4g190210 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.838
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.838
Bra004572 Brassica rapa Bra004572 I 0.838
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
Si012018m.g Setaria italica Si012018m.g I 0.828
Bra018320 Brassica rapa Bra018320 I 0.828
Cla007391 Citrullus lanatus Cla007391 I 0.828
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
Bra016992 Brassica rapa Bra016992 I 0.828
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.818
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.818
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.818
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.818
mgf020556m Mimulus guttatus mgf020556m I 0.818
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.818
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.818
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.818
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.818
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.818
F775_25790 Aegilops tauschii F775_25790 I 0.818
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.818
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.818
OB01G44400 Oryza brachyantha OB01G44400 I 0.818
OBART05G04570 Oryza barthii OBART05G04570 I 0.818
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.818
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.818
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.818
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.818
OS05G0165450 Oryza sativa OS05G0165450 I 0.818
OBART01G35680 Oryza barthii OBART01G35680 I 0.808
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.808
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.808
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.808
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.808
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.808
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.808
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.808
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.808
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.808
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.808
OS01G0825000 Oryza sativa OS01G0825000 I 0.808
Si004575m.g Setaria italica Si004575m.g I 0.808
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.808
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.808
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.808
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.808
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.798
F775_52636 Aegilops tauschii F775_52636 I 0.798
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.798
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.798
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.798
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.798
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.798
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.798
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.788
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.788
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.778
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.768
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.758
OB05G14280 Oryza brachyantha OB05G14280 I 0.747
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.727
PK18922.1 Cannabis sativa PK18922.1 I 0.719
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
Bo3g024350 Brassica oleracea Bo3g024350 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
Bra022780 Brassica rapa Bra022780 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.712
Bo4g190140 Brassica oleracea Bo4g190140 I 0.711
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707