Ciclev10006208m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10006208m.g T246796_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.859 0.859
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10006208m LOB 12 110

Links

Other LOB family TFs
Other Citrus clementina TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 1.000
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.919
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.919
30169.m006340 Ricinus communis 30169.m006340 I 0.899
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.899
TCM_032557 Theobroma cacao TCM_032557 I 0.899
MDP0000284409 Malus domestica MDP0000284409 I 0.889
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.889
Pm011040 Prunus mume Pm011040 I 0.889
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.889
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.889
MDP0000268890 Malus domestica MDP0000268890 I 0.889
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.879
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.879
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.879
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.879
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.879
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.879
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.879
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.879
Ca_13575 Cicer arietinum Ca_13575 I 0.879
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.879
MDP0000121203 Malus domestica MDP0000121203 I 0.879
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.869
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.869
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.869
TCM_029315 Theobroma cacao TCM_029315 I 0.869
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.869
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.869
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.869
PK11564.1 Cannabis sativa PK11564.1 I 0.869
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.869
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.869
Cla013678 Citrullus lanatus Cla013678 I 0.869
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.869
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.859
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.859
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.859
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.859
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.859
LBD4 Arabidopsis thaliana AT1G31320 D 0.859
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.859
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.859
PK24688.1 Cannabis sativa PK24688.1 I 0.859
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.859
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.859
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.859
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.859
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.859
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.859
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.859
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.859
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.859
Ca_06548 Cicer arietinum Ca_06548 I 0.848
Bra014907 Brassica rapa Bra014907 I 0.848
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.848
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.848
mgf026046m Mimulus guttatus mgf026046m I 0.848
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.848
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.848
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.848
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.848
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.838
Bo7g041000 Brassica oleracea Bo7g041000 I 0.838
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.838
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.828
mgf022958m Mimulus guttatus mgf022958m I 0.828
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.828
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.808
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.808
Cla009336 Citrullus lanatus Cla009336 I 0.808
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.808
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.808
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.798
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.798
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.788
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.788
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.788
Si037583m.g Setaria italica Si037583m.g I 0.788
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.788
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.788
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.788
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.788
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.788
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.788
PK21617.1 Cannabis sativa PK21617.1 I 0.783
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.778
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.778
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.778
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.778
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.778
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.778
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.778
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.778
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.778
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.778
Cla005598 Citrullus lanatus Cla005598 I 0.778
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.778
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.778
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.778
Pm018982 Prunus mume Pm018982 I 0.778
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.768
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.768
Ca_08998 Cicer arietinum Ca_08998 I 0.768
Si026864m.g Setaria italica Si026864m.g I 0.768
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.768
Pm000193 Prunus mume Pm000193 I 0.768
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.768
29729.m002278 Ricinus communis 29729.m002278 I 0.768
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.768
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.768
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.768
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.768
MDP0000265429 Malus domestica MDP0000265429 I 0.768
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.768
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.768
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.768
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.768
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.758
Ca_12450 Cicer arietinum Ca_12450 I 0.758
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.758
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.758
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.758
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.758
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.758
mgf018189m Mimulus guttatus mgf018189m I 0.758
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.758
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.758
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.758
Bra026042 Brassica rapa Bra026042 I 0.758
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.758
mgf019461m Mimulus guttatus mgf019461m I 0.758
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.758
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.758
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.758
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.758
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.758
MDP0000861160 Malus domestica MDP0000861160 I 0.758
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.758
TCM_042212 Theobroma cacao TCM_042212 I 0.758
TCM_042447 Theobroma cacao TCM_042447 I 0.758
MDP0000155138 Malus domestica MDP0000155138 I 0.758
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.758
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.758
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.753
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.747
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.747
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.747
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.747
MDP0000194766 Malus domestica MDP0000194766 I 0.747
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.747
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.747
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.747
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.747
LBD12 Arabidopsis thaliana AT2G30130 I 0.747
LBD3 Arabidopsis thaliana AT1G16530 I 0.747
Bo4g059700 Brassica oleracea Bo4g059700 I 0.747
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.747
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.747
Bra018335 Brassica rapa Bra018335 I 0.747
Bo5g021980 Brassica oleracea Bo5g021980 I 0.747
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.747
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.747
OBART03G28270 Oryza barthii OBART03G28270 I 0.747
OB05G20740 Oryza brachyantha OB05G20740 I 0.747
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.747
Si024229m.g Setaria italica Si024229m.g I 0.747
OBART05G12620 Oryza barthii OBART05G12620 I 0.747
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.747
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.747
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.747
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.747
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.747
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.747
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.747
OS05G0346800 Oryza sativa OS05G0346800 I 0.747
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.747
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.747
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.747
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.747
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.747
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.747
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.747
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.741
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.737
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.737
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.737
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.737
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.737
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.737
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.737
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.737
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.737
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.737
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.737
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.737
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.737
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.737
Bra021612 Brassica rapa Bra021612 I 0.737
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.737
Bo4g170770 Brassica oleracea Bo4g170770 I 0.737
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.737
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.737
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.737
Cla007354 Citrullus lanatus Cla007354 I 0.737
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.727
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.727
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.727
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.727
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.727
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.727
Bra022780 Brassica rapa Bra022780 I 0.727
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.727
Ca_13388 Cicer arietinum Ca_13388 I 0.727
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.727
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.727
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.727
Bo8g105450 Brassica oleracea Bo8g105450 I 0.727
Bo3g024350 Brassica oleracea Bo3g024350 I 0.727
OB05G14280 Oryza brachyantha OB05G14280 I 0.724
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.718
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.717
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.717
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.717
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.717
F775_08326 Aegilops tauschii F775_08326 I 0.717
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.717
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.717
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.717
Bra026716 Brassica rapa Bra026716 I 0.717
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.717
OB12G10480 Oryza brachyantha OB12G10480 I 0.717
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.717
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.717
OB11G10200 Oryza brachyantha OB11G10200 I 0.717
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.707
OGLUM12G00350 Oryza glumaepatula OGLUM12G00350 I 0.707
TCM_045438 Theobroma cacao TCM_045438 I 0.707
Si011647m.g Setaria italica Si011647m.g I 0.707
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.707
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.707
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.707
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.707
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.707
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.707
LPERR11G00440 Leersia perrieri LPERR11G00440 I 0.707
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.707
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.707
ORGLA12G0001500 Oryza glaberrima ORGLA12G0001500 I 0.707
MDP0000277239 Malus domestica MDP0000277239 I 0.707
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.707
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.707
PK18922.1 Cannabis sativa PK18922.1 I 0.702