Ciclev10013705m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10013705m.g T246801_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10013705m LOB 67 169

Links

Other LOB family TFs
Other Citrus clementina TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 1.000
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.980
TCM_019459 Theobroma cacao TCM_019459 N 0.970
Cla007208 Citrullus lanatus Cla007208 N 0.969
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.969
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.969
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.969
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.969
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.969
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N 0.960
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.960
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N 0.960
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N 0.959
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.959
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.959
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.959
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.949
GLYMA18G53440 Glycine max GLYMA18G53440 N 0.949
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N 0.949
PK03169.1 Cannabis sativa PK03169.1 N 0.949
GLYMA19G06280 Glycine max GLYMA19G06280 N 0.949
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.949
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N 0.949
GSMUA_AchrUn_randomG00460_001 Musa acuminata GSMUA_AchrUn_randomG00460_001 N 0.939
MDP0000136037 Malus domestica MDP0000136037 N 0.939
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.939
gene10300-v1.0-hybrid Fragaria vesca gene10300-v1.0-hybrid N 0.939
GSMUA_Achr9G21360_001 Musa acuminata GSMUA_Achr9G21360_001 N 0.929
GSMUA_Achr4G03700_001 Musa acuminata GSMUA_Achr4G03700_001 N 0.929
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N 0.929
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N 0.919
Solyc02g085910.2 Solanum lycopersicum Solyc02g085910.2 N 0.918
PGSC0003DMG400012653 Solanum tuberosum PGSC0003DMG400012653 N 0.918
mgf010898m Mimulus guttatus mgf010898m N 0.908
Thhalv10021328m.g Eutrema salsugineum Thhalv10021328m.g N 0.899
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.899
OGLUM01G20320 Oryza glumaepatula OGLUM01G20320 N 0.898
OBART01G17510 Oryza barthii OBART01G17510 N 0.898
ONIVA01G19320 Oryza nivara ONIVA01G19320 N 0.898
ORUFI01G19440 Oryza rufipogon ORUFI01G19440 N 0.898
OS01G0511000 Oryza sativa OS01G0511000 N 0.898
OPUNC01G18000 Oryza punctata OPUNC01G18000 N 0.898
Bo3g055690 Brassica oleracea Bo3g055690 N 0.898
BGIOSGA001546 Oryza indica BGIOSGA001546 N 0.898
OMERI01G16320 Oryza meridionalis OMERI01G16320 N 0.898
mgf011656m Mimulus guttatus mgf011656m N 0.898
Bra021433 Brassica rapa Bra021433 N 0.898
Carubv10002654m.g Capsella rubella Carubv10002654m.g N 0.898
Lus10028470.g Linum usitatissimum Lus10028470.g N 0.889
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N 0.889
Carubv10021721m.g Capsella rubella Carubv10021721m.g N 0.889
Carubv10015363m.g Capsella rubella Carubv10015363m.g N 0.889
Cagra.1194s0049 Capsella grandiflora Cagra.1194s0049 N 0.889
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N 0.889
LBD41 Arabidopsis thaliana AT3G02550 N 0.889
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.889
Bostr.1460s0172 Boechera stricta Bostr.1460s0172 N 0.889
LBD41 Arabidopsis lyrata fgenesh2_kg.3__191__AT3G02550.1 N 0.889
LBD40 Arabidopsis thaliana AT1G67100 N 0.889
Carubv10000015m.g Capsella rubella Carubv10000015m.g N 0.888
VIT_17s0000g03720 Vitis vinifera VIT_17s0000g03720 N 0.888
Bostr.2902s0344 Boechera stricta Bostr.2902s0344 N 0.888
LPERR01G15290 Leersia perrieri LPERR01G15290 N 0.888
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N 0.879
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.879
Bo1g156310 Brassica oleracea Bo1g156310 N 0.879
Eucgr.F02492 Eucalyptus grandis Eucgr.F02492 N 0.878
Cla019264 Citrullus lanatus Cla019264 N 0.878
Cucsa.199060 Cucumis sativus Cucsa.199060 N 0.878
VIT_01s0011g03540 Vitis vinifera VIT_01s0011g03540 N 0.876
Traes_2DL_9D8B5B436 Triticum aestivum Traes_2DL_9D8B5B436 N 0.869
Traes_2BL_3A840DB921 Triticum aestivum Traes_2BL_3A840DB921 N 0.869
Traes_2AL_450404EA6 Triticum aestivum Traes_2AL_450404EA6 N 0.869
Cagra.6845s0054 Capsella grandiflora Cagra.6845s0054 N 0.869
MLOC_58304 Hordeum vulgare MLOC_58304 N 0.869
Bo2g055410 Brassica oleracea Bo2g055410 N 0.869
GSMUA_Achr1G20970_001 Musa acuminata GSMUA_Achr1G20970_001 N 0.867
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N 0.859
Ca_22996 Cicer arietinum Ca_22996 N 0.859
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N 0.857
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N 0.857
Pavir.Ea01295 Panicum virgatum Pavir.Ea01295 N 0.857
Solyc03g119530.2 Solanum lycopersicum Solyc03g119530.2 N 0.857
PGSC0003DMG400005719 Solanum tuberosum PGSC0003DMG400005719 N 0.857
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.850
TCM_009888 Theobroma cacao TCM_009888 N 0.847
Si022660m.g Setaria italica Si022660m.g N 0.847
cassava38982.m1 Manihot esculenta cassava38982.m1 N 0.847
GRMZM2G060544 Zea mays GRMZM2G060544 N 0.847
LjSGA_023437.1 Lotus japonicus LjSGA_023437.1 N 0.847
BRADI4G16750 Brachypodium distachyon BRADI4G16750 N 0.838
BRADI4G16740 Brachypodium distachyon BRADI4G16740 N 0.838
Sb01g032580 Sorghum bicolor Sb01g032580 N 0.838
evm.TU.supercontig_3.514 Carica papaya evm.TU.supercontig_3.514 N 0.838
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N 0.837
Pavir.J01483 Panicum virgatum Pavir.J01483 N 0.837
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N 0.837
BGIOSGA002703 Oryza indica BGIOSGA002703 N 0.837
PGSC0003DMG400014547 Solanum tuberosum PGSC0003DMG400014547 N 0.837
ONIVA01G02110 Oryza nivara ONIVA01G02110 N 0.837
OB01G11830 Oryza brachyantha OB01G11830 N 0.837
LPERR01G01830 Leersia perrieri LPERR01G01830 N 0.837
OBART01G01940 Oryza barthii OBART01G01940 N 0.837
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N 0.837
OPUNC01G01670 Oryza punctata OPUNC01G01670 N 0.837
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N 0.837
cassava43296.valid.m1 Manihot esculenta cassava43296.valid.m1 N 0.837
Solyc05g009320.2 Solanum lycopersicum Solyc05g009320.2 N 0.837
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.837
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.837
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.835
Pavir.Eb02390 Panicum virgatum Pavir.Eb02390 N 0.828
28207.m000107 Ricinus communis 28207.m000107 N 0.827
Pavir.J00526 Panicum virgatum Pavir.J00526 N 0.827
GSMUA_Achr2G14600_001 Musa acuminata GSMUA_Achr2G14600_001 N 0.827
OMERI01G01380 Oryza meridionalis OMERI01G01380 N 0.827
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.827
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N 0.827
TCM_012338 Theobroma cacao TCM_012338 N 0.827
Si004887m.g Setaria italica Si004887m.g N 0.825
SapurV1A.0078s0410 Salix purpurea SapurV1A.0078s0410 N 0.825
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N 0.818
Gorai.002G217800 Gossypium raimondii Gorai.002G217800 N 0.816
27524.m000293 Ricinus communis 27524.m000293 N 0.816
Sb09g030780 Sorghum bicolor Sb09g030780 N 0.816
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N 0.816
GRMZM2G386674 Zea mays GRMZM2G386674 N 0.806
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N 0.806
TRAES3BF008600030CFD_g Triticum aestivum TRAES3BF008600030CFD_g N 0.806
Si002412m.g Setaria italica Si002412m.g N 0.806
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N 0.806
TRAES3BF008500030CFD_g Triticum aestivum TRAES3BF008500030CFD_g N 0.806
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N 0.806
Pm029059 Prunus mume Pm029059 N 0.806
Thhalv10019494m.g Eutrema salsugineum Thhalv10019494m.g N 0.806
GSMUA_Achr2G22720_001 Musa acuminata GSMUA_Achr2G22720_001 N 0.800
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N 0.798
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N 0.796
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N 0.796
LBD42 Arabidopsis thaliana AT1G68510 N 0.796
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.796
Bo6g106960 Brassica oleracea Bo6g106960 N 0.794
Carubv10022391m.g Capsella rubella Carubv10022391m.g N 0.794
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N 0.794
Bra004315 Brassica rapa Bra004315 N 0.794
PK04625.1 Cannabis sativa PK04625.1 N 0.791
MDP0000233303 Malus domestica MDP0000233303 N 0.786
GRMZM2G073044 Zea mays GRMZM2G073044 N 0.786
mgf017960m Mimulus guttatus mgf017960m N 0.786
PK04548.1 Cannabis sativa PK04548.1 N 0.786
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N 0.786
OLONG_008015 Oryza longistaminata OLONG_008015 N 0.778
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N 0.778
Gorai.006G061200 Gossypium raimondii Gorai.006G061200 N 0.776
evm.TU.supercontig_1.42 Carica papaya evm.TU.supercontig_1.42 N 0.776
VIT_01s0011g03530 Vitis vinifera VIT_01s0011g03530 N 0.773
GLYMA20G24950 Glycine max GLYMA20G24950 N 0.768
Cla020705 Citrullus lanatus Cla020705 N 0.765
Cucsa.283560 Cucumis sativus Cucsa.283560 N 0.765
Sb09g025710 Sorghum bicolor Sb09g025710 N 0.763
Eucgr.B03016 Eucalyptus grandis Eucgr.B03016 N 0.758
AC234149.1_FG002 Zea mays AC234149.1_FG002 N 0.755
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.755
OB01G27020 Oryza brachyantha OB01G27020 N 0.755
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.755
PK25954.1 Cannabis sativa PK25954.1 N 0.739
GLYMA08G31143 Glycine max GLYMA08G31143 N 0.737
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.735
Sb09g025700 Sorghum bicolor Sb09g025700 N 0.735
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.735
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.724
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N 0.724
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.724
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.724
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.722
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.722
mgf021653m Mimulus guttatus mgf021653m N 0.722
Ca_05488 Cicer arietinum Ca_05488 N 0.717
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.714
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N 0.714
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N 0.714
29661.m000902 Ricinus communis 29661.m000902 N 0.714
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.714
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.714
TCM_000766 Theobroma cacao TCM_000766 N 0.714
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.714
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.714
LBD38 Arabidopsis thaliana AT3G49940 N 0.714
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.714
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.714
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.714
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.714
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.714
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.714
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.714
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N 0.714
Carubv10005616m.g Capsella rubella Carubv10005616m.g N 0.714
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.714
MDP0000881409 Malus domestica MDP0000881409 N 0.712
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.704
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N 0.704
Bra011772 Brassica rapa Bra011772 N 0.704
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.704
Bo1g003550 Brassica oleracea Bo1g003550 N 0.704
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.704
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N 0.704
PK15647.1 Cannabis sativa PK15647.1 N 0.704
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.704
Lus10019292.g Linum usitatissimum Lus10019292.g N 0.704
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N 0.704
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.704
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.704
Si031011m.g Setaria italica Si031011m.g N 0.704
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.704
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.704
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N 0.704
Lus10011530.g Linum usitatissimum Lus10011530.g N 0.704
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.704
LPERR07G17900 Leersia perrieri LPERR07G17900 N 0.703