Ciclev10022291m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10022291m.g T246812_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.808 0.808
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.808 0.808
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.768 0.768
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.768 0.768
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.768 0.768
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10022291m LOB 9 108

Links

Other LOB family TFs
Other Citrus clementina TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.956
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.879
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.848
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.848
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.848
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.848
PK25573.1 Cannabis sativa PK25573.1 I 0.848
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.838
MDP0000429067 Malus domestica MDP0000429067 I 0.838
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.838
mgf020735m Mimulus guttatus mgf020735m I 0.838
Pm017935 Prunus mume Pm017935 I 0.838
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.838
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.828
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.828
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.828
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.828
Ca_19598 Cicer arietinum Ca_19598 I 0.828
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.828
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.818
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.818
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.818
30174.m008897 Ricinus communis 30174.m008897 I 0.818
Cla007069 Citrullus lanatus Cla007069 I 0.818
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.818
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.808
TCM_005497 Theobroma cacao TCM_005497 I 0.808
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.808
LBD19 Arabidopsis thaliana AT2G45410 D 0.808
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.798
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.798
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.798
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.798
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.798
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.798
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.798
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.798
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.798
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.798
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.798
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.798
30174.m008898 Ricinus communis 30174.m008898 I 0.798
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.798
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.788
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.788
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.788
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.788
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.788
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.788
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
Cla007068 Citrullus lanatus Cla007068 I 0.788
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.788
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
Pm017936 Prunus mume Pm017936 I 0.788
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.788
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.787
LBD31 Arabidopsis thaliana AT4G00210 I 0.778
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.778
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.778
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.778
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.778
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.778
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.778
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.778
Bo4g024620 Brassica oleracea Bo4g024620 I 0.768
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.768
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.768
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.768
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.768
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.768
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.768
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.768
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.768
Bo2g097560 Brassica oleracea Bo2g097560 I 0.768
Bra008514 Brassica rapa Bra008514 I 0.768
LBD18 Arabidopsis thaliana AT2G45420 D 0.768
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.768
Bo4g195520 Brassica oleracea Bo4g195520 I 0.768
Bo9g002160 Brassica oleracea Bo9g002160 I 0.768
Bra037323 Brassica rapa Bra037323 I 0.768
Bra040311 Brassica rapa Bra040311 I 0.768
LBD30 Arabidopsis thaliana AT4G00220 D 0.768
Ca_20428 Cicer arietinum Ca_20428 I 0.768
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.768
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.758
Bra004910 Brassica rapa Bra004910 I 0.758
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.758
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.758
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.758
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.758
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.747
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.747
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.747
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.747
Bra040312 Brassica rapa Bra040312 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.745
OB10G12360 Oryza brachyantha OB10G12360 I 0.737
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.737
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.737
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.737
Bra004908 Brassica rapa Bra004908 I 0.737
Bo4g024610 Brassica oleracea Bo4g024610 I 0.737
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.727
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.727
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.727
mgf020773m Mimulus guttatus mgf020773m I 0.717
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.717
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.717
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.717
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.717
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.717
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.717
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.717
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.717
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
OB08G30680 Oryza brachyantha OB08G30680 I 0.717
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
LBD29 Arabidopsis thaliana AT3G58190 I 0.717
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.717
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
Cla006087 Citrullus lanatus Cla006087 I 0.717
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.717
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.707
Ca_20429 Cicer arietinum Ca_20429 I 0.707
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
28428.m000040 Ricinus communis 28428.m000040 I 0.707
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.707
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707
Bo8g092560 Brassica oleracea Bo8g092560 I 0.707
F775_04528 Aegilops tauschii F775_04528 I 0.707
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.707
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.707
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.707
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.707
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.707
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.707
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
OS08G0563400 Oryza sativa OS08G0563400 I 0.707
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.707
MDP0000254224 Malus domestica MDP0000254224 I 0.707