Ciclev10032684m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10032684m.g T246823_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.818 0.818
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10032684m LOB 42 140

Links

Other LOB family TFs
Other Citrus clementina TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.859
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.828
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.848
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.929
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.939
30169.m006340 Ricinus communis 30169.m006340 I 0.707
29957.m001411 Ricinus communis 29957.m001411 I 0.848
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.859
mgf011471m Mimulus guttatus mgf011471m I 0.869
mgf020556m Mimulus guttatus mgf020556m I 0.869
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.919
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.919
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.919
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.929
mgf026046m Mimulus guttatus mgf026046m I 0.707
29729.m002335 Ricinus communis 29729.m002335 I 0.929
Pm011040 Prunus mume Pm011040 I 0.707
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.877
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.818
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
TCM_045438 Theobroma cacao TCM_045438 I 0.939
TCM_042262 Theobroma cacao TCM_042262 I 0.899
TCM_032557 Theobroma cacao TCM_032557 I 0.707
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.828
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.828
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.939
Pm000277 Prunus mume Pm000277 I 0.838
Cla007391 Citrullus lanatus Cla007391 I 0.889
Ca_15642 Cicer arietinum Ca_15642 I 0.838
Ca_12450 Cicer arietinum Ca_12450 I 0.707
Ca_12420 Cicer arietinum Ca_12420 I 0.879
Ca_06548 Cicer arietinum Ca_06548 I 0.707
Ca_04126 Cicer arietinum Ca_04126 I 0.919
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.828
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.848
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.828
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.909
PK03716.1 Cannabis sativa PK03716.1 I 0.794
PK17217.1 Cannabis sativa PK17217.1 I 0.919
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.843
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.899
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.929
PK29334.1 Cannabis sativa PK29334.1 I 0.703
PK21617.1 Cannabis sativa PK21617.1 I 0.935
PK18922.1 Cannabis sativa PK18922.1 I 0.702
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.808
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.939
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.848
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.939
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.919
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.929
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.899
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.869
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 1.000
MDP0000284409 Malus domestica MDP0000284409 I 0.707
MDP0000278334 Malus domestica MDP0000278334 I 0.909
MDP0000268890 Malus domestica MDP0000268890 I 0.707
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.778
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.869
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.818
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.717
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.889
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.929
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.929
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.919
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.879
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.859
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.899
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.838
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.828
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.879
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.818
F775_52636 Aegilops tauschii F775_52636 I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.818
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
Bo4g012620 Brassica oleracea Bo4g012620 I 0.899
Bo3g034980 Brassica oleracea Bo3g034980 I 0.909
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.828
LBD15 Arabidopsis thaliana AT2G40470 I 0.919
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
Bo4g190210 Brassica oleracea Bo4g190210 I 0.899
Bra000188 Brassica rapa Bra000188 I 0.909
F775_25790 Aegilops tauschii F775_25790 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
Bra022780 Brassica rapa Bra022780 I 0.707
Bra021627 Brassica rapa Bra021627 I 0.818
Bra018320 Brassica rapa Bra018320 I 0.818
Bra016992 Brassica rapa Bra016992 I 0.889
Bra004572 Brassica rapa Bra004572 I 0.899
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.919
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.818
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.939
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.828
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.919
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
Si026864m.g Setaria italica Si026864m.g I 0.717
Si012018m.g Setaria italica Si012018m.g I 0.869
Si004575m.g Setaria italica Si004575m.g I 0.828
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.737
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.737
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.828
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.828
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
OBART01G35680 Oryza barthii OBART01G35680 I 0.828
OB05G14280 Oryza brachyantha OB05G14280 I 0.908
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.889
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.828
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
OS01G0825000 Oryza sativa OS01G0825000 I 0.828
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.828
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.828
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746