Ciclev10032772m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10032772m.g T246824_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10032772m LOB 43 141

Links

Other LOB family TFs
Other Citrus clementina TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 1.000
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.838
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.838
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.828
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.828
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.828
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.828
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.828
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.828
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.828
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.818
Ca_04287 Cicer arietinum Ca_04287 I 0.818
TCM_041094 Theobroma cacao TCM_041094 I 0.818
30111.m000703 Ricinus communis 30111.m000703 I 0.818
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.818
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.818
TCM_043081 Theobroma cacao TCM_043081 I 0.818
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.818
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.818
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.818
PK27389.1 Cannabis sativa PK27389.1 I 0.818
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.818
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.818
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.818
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.818
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.818
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.818
Ca_14605 Cicer arietinum Ca_14605 I 0.818
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.808
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.808
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.808
PK23777.1 Cannabis sativa PK23777.1 I 0.808
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.808
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.808
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.808
Pm000938 Prunus mume Pm000938 I 0.808
Cla020379 Citrullus lanatus Cla020379 I 0.808
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.808
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.808
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.808
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.808
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.798
MDP0000123013 Malus domestica MDP0000123013 I 0.798
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.798
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.798
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.798
Cla000556 Citrullus lanatus Cla000556 I 0.798
MDP0000822986 Malus domestica MDP0000822986 I 0.798
Pm018585 Prunus mume Pm018585 I 0.798
MDP0000319331 Malus domestica MDP0000319331 I 0.798
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.798
MDP0000151784 Malus domestica MDP0000151784 I 0.798
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.798
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.795
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.788
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.788
MDP0000318244 Malus domestica MDP0000318244 I 0.788
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.788
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.788
MDP0000879799 Malus domestica MDP0000879799 N 0.788
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.788
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.788
mgf022524m Mimulus guttatus mgf022524m N 0.788
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.788
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.788
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.788
MDP0000218986 Malus domestica MDP0000218986 I 0.788
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.788
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.778
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.778
OB05G11740 Oryza brachyantha OB05G11740 I 0.778
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.778
Bo8g112780 Brassica oleracea Bo8g112780 N 0.778
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.778
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.778
Cla005134 Citrullus lanatus Cla005134 N 0.778
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.778
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.778
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.778
Bo5g008590 Brassica oleracea Bo5g008590 N 0.768
Bra018675 Brassica rapa Bra018675 N 0.768
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.768
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.768
Bra031599 Brassica rapa Bra031599 N 0.768
mgf015666m Mimulus guttatus mgf015666m N 0.768
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.768
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.768
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.768
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.758
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.758
Bo3g040220 Brassica oleracea Bo3g040220 N 0.758
mgf019622m Mimulus guttatus mgf019622m N 0.758
Bo01039s010 Brassica oleracea Bo01039s010 N 0.758
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.758
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.758
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.758
Bra011942 Brassica rapa Bra011942 N 0.758
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.758
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.758
Bra000491 Brassica rapa Bra000491 N 0.758
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.758
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.758
Ca_02507 Cicer arietinum Ca_02507 N 0.758
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.747
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.747
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.747
Bo4g165420 Brassica oleracea Bo4g165420 N 0.747
Bra035698 Brassica rapa Bra035698 N 0.747
LBD11 Arabidopsis thaliana AT2G28500 N 0.747
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
Cla005133 Citrullus lanatus Cla005133 N 0.747
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.747
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.747
Si024430m.g Setaria italica Si024430m.g N 0.747
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.747
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.739
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.737
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.737
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.737
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.737
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.737
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.737
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.736
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
Ca_13575 Cicer arietinum Ca_13575 I 0.727
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.727
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.727
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.727
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.725
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.723
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.717
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.717
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.717
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.717
Pm011040 Prunus mume Pm011040 I 0.717
30169.m006340 Ricinus communis 30169.m006340 I 0.717
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.717
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.717
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.717
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.712
OBART05G01640 Oryza barthii OBART05G01640 N 0.712
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.712
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.712
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.707
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.707
PK11564.1 Cannabis sativa PK11564.1 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
OS03G0287400 Oryza sativa OS03G0287400 N 0.707
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.707
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.707
Si037280m.g Setaria italica Si037280m.g N 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.707
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.707
OB03G23270 Oryza brachyantha OB03G23270 N 0.707
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707
OBART03G13260 Oryza barthii OBART03G13260 N 0.707
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.707
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.707
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.707
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707