Ciclev10033354m.g (Citrus clementina)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ciclev10033354m.g T246828_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.737 0.737
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10033354m LOB 7 106

Links

Other LOB family TFs
Other Citrus clementina TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.919
SapurV1A.0281s0190 Salix purpurea SapurV1A.0281s0190 I 0.899
LBD33 Vitis vinifera VIT_13s0019g02060 N 0.889
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.889
TCM_042730 Theobroma cacao TCM_042730 I 0.869
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.859
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.859
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.848
MDP0000133936 Malus domestica MDP0000133936 N 0.848
30143.m001171 Ricinus communis 30143.m001171 N 0.848
MDP0000123797 Malus domestica MDP0000123797 N 0.838
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.838
PRUPE_ppa018815mg Prunus persica PRUPE_ppa018815mg N 0.838
Pm018835 Prunus mume Pm018835 N 0.838
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.819
Ca_16122 Cicer arietinum Ca_16122 N 0.818
GLYMA14G07260 Glycine max GLYMA14G07260 N 0.818
GLYMA02G41710 Glycine max GLYMA02G41710 N 0.808
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.778
Carubv10002921m.g Capsella rubella Carubv10002921m.g N 0.778
MTR_5g080470 Medicago truncatula MTR_5g080470 N 0.778
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 0.778
Bo9g176580 Brassica oleracea Bo9g176580 N 0.768
Bostr.13129s0366 Boechera stricta Bostr.13129s0366 N 0.768
LBD33 Arabidopsis thaliana AT5G06080 N 0.768
Bra009161 Brassica rapa Bra009161 N 0.768
mgf020558m Mimulus guttatus mgf020558m N 0.747
Cucsa.165150 Cucumis sativus Cucsa.165150 N 0.747
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Cla004059 Citrullus lanatus Cla004059 N 0.737
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
TCM_005496 Theobroma cacao TCM_005496 I 0.728
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.727
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.727
Aquca_003_00139 Aquilegia coerulea Aquca_003_00139 N 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.727
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.727
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I 0.727
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.727
30174.m008898 Ricinus communis 30174.m008898 I 0.727
Bo4g024620 Brassica oleracea Bo4g024620 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
Bra040311 Brassica rapa Bra040311 I 0.727
Bra004910 Brassica rapa Bra004910 I 0.727
Thhalv10015772m.g Eutrema salsugineum Thhalv10015772m.g N 0.719
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
Cla007068 Citrullus lanatus Cla007068 I 0.717
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.717
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.717
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.717
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.717
Bo4g195520 Brassica oleracea Bo4g195520 I 0.717
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
Lus10004707.g Linum usitatissimum Lus10004707.g N 0.717
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.707
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.707
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.707
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.707
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.707
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.707
OBART03G10450 Oryza barthii OBART03G10450 I 0.707
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.707
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.707
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.707
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.707
LBD29 Arabidopsis thaliana AT3G58190 I 0.707
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
F775_22967 Aegilops tauschii F775_22967 I 0.707
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.707
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.707
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.707
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.707
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.707
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.707
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.707
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.707
OS03G0246900 Oryza sativa OS03G0246900 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.707