Eucgr.B04019 (Eucalyptus grandis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Eucgr.B04019 T246836_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B04019.1 LOB 50 148

Links

Other LOB family TFs
Other Eucalyptus grandis TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.919
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
29729.m002335 Ricinus communis 29729.m002335 I 0.919
TCM_042262 Theobroma cacao TCM_042262 I 0.919
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
29957.m001411 Ricinus communis 29957.m001411 I 0.909
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.899
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.899
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.899
TCM_045438 Theobroma cacao TCM_045438 I 0.899
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.899
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.899
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.899
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.889
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.889
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.889
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.889
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.889
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.879
LBD15 Arabidopsis thaliana AT2G40470 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.879
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.879
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.879
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.879
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.879
PK17217.1 Cannabis sativa PK17217.1 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.879
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.879
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.879
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.879
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
Bo3g034980 Brassica oleracea Bo3g034980 I 0.869
mgf020556m Mimulus guttatus mgf020556m I 0.869
Bra000188 Brassica rapa Bra000188 I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
Cla007391 Citrullus lanatus Cla007391 I 0.869
Bra016992 Brassica rapa Bra016992 I 0.869
MDP0000278334 Malus domestica MDP0000278334 I 0.869
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.869
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.869
Pm000277 Prunus mume Pm000277 I 0.869
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.859
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.859
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Ca_15642 Cicer arietinum Ca_15642 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.848
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.848
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.838
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.838
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.838
Ca_12420 Cicer arietinum Ca_12420 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.828
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.828
OS05G0165450 Oryza sativa OS05G0165450 I 0.828
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.828
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.828
OBART05G04570 Oryza barthii OBART05G04570 I 0.828
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.828
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.828
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.828
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
F775_25790 Aegilops tauschii F775_25790 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.828
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.818
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.818
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.818
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.818
OB01G44400 Oryza brachyantha OB01G44400 I 0.818
OBART01G35680 Oryza barthii OBART01G35680 I 0.818
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.818
OS01G0825000 Oryza sativa OS01G0825000 I 0.818
Si004575m.g Setaria italica Si004575m.g I 0.818
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.818
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.818
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.818
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.818
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.808
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.808
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.808
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.808
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.808
F775_52636 Aegilops tauschii F775_52636 I 0.808
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.808
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.798
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.768
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.768
OB05G14280 Oryza brachyantha OB05G14280 I 0.758
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.729
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.717
LBD4 Arabidopsis thaliana AT1G31320 D 0.717
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.717
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
Bra014907 Brassica rapa Bra014907 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707