Eucgr.G03121 (Eucalyptus grandis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Eucgr.G03121 T246853_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.859 0.859
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.859 0.859
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.G03121.1 LOB 45 143

Links

Other LOB family TFs
Other Eucalyptus grandis TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD4 Arabidopsis thaliana AT1G31320 D 0.717
LBD13 Arabidopsis thaliana AT2G30340 D 0.859
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.960
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.717
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.980
mgf026046m Mimulus guttatus mgf026046m I 0.727
mgf020556m Mimulus guttatus mgf020556m I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.909
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.960
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.859
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.909
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.929
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.747
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.848
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.960
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.717
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.960
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.717
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.939
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.909
Ca_15642 Cicer arietinum Ca_15642 I 0.869
Ca_12420 Cicer arietinum Ca_12420 I 0.909
Ca_04126 Cicer arietinum Ca_04126 I 0.939
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.980
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.707
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.838
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.828
Cla007391 Citrullus lanatus Cla007391 I 0.939
Cla013678 Citrullus lanatus Cla013678 I 0.717
Pm000277 Prunus mume Pm000277 I 0.879
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.717
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.970
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.717
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.980
30169.m006340 Ricinus communis 30169.m006340 I 0.737
29957.m001411 Ricinus communis 29957.m001411 I 0.919
29729.m002335 Ricinus communis 29729.m002335 I 0.980
Pm011040 Prunus mume Pm011040 I 0.727
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.838
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.818
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.899
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.889
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.707
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.939
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.949
PK24688.1 Cannabis sativa PK24688.1 I 0.707
PK17217.1 Cannabis sativa PK17217.1 I 0.960
PK11564.1 Cannabis sativa PK11564.1 I 0.717
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.949
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.859
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.717
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.747
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.707
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.980
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.707
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.899
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.727
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.970
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.717
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.949
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.939
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.929
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.929
MDP0000284409 Malus domestica MDP0000284409 I 0.727
MDP0000278334 Malus domestica MDP0000278334 I 0.949
MDP0000268890 Malus domestica MDP0000268890 I 0.727
MDP0000121203 Malus domestica MDP0000121203 I 0.717
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.929
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.838
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.909
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.828
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.707
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.919
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.838
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.838
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
OBART01G35680 Oryza barthii OBART01G35680 I 0.838
OB05G14280 Oryza brachyantha OB05G14280 I 0.788
OB01G44400 Oryza brachyantha OB01G44400 I 0.838
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.909
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.889
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.929
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.970
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.970
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.899
Bra000188 Brassica rapa Bra000188 I 0.949
Bo4g190210 Brassica oleracea Bo4g190210 I 0.939
Bo4g172950 Brassica oleracea Bo4g172950 I 0.869
Bo4g059520 Brassica oleracea Bo4g059520 I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.939
Bo3g034980 Brassica oleracea Bo3g034980 I 0.949
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.838
LBD15 Arabidopsis thaliana AT2G40470 I 0.960
Bra004572 Brassica rapa Bra004572 I 0.939
Bra014907 Brassica rapa Bra014907 I 0.707
Bra016992 Brassica rapa Bra016992 I 0.949
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.960
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.869
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.717
F775_52636 Aegilops tauschii F775_52636 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.838
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
Bra021627 Brassica rapa Bra021627 I 0.869
Bra018320 Brassica rapa Bra018320 I 0.859
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.960
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.717
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.859
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.859
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.828
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.889
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Si004575m.g Setaria italica Si004575m.g I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.859
TCM_045438 Theobroma cacao TCM_045438 I 0.980
TCM_042262 Theobroma cacao TCM_042262 I 0.919
TCM_032557 Theobroma cacao TCM_032557 I 0.737
TCM_029315 Theobroma cacao TCM_029315 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
Si026864m.g Setaria italica Si026864m.g I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.727
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.980
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.899
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.838
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.838
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.838
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.838
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
OS01G0825000 Oryza sativa OS01G0825000 I 0.838
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.889
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.949
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.727
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.707
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.707
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.838