evm.TU.supercontig_108.62 (Carica papaya)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 evm.TU.supercontig_108.62 T246871_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.859 0.859
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_108.62 LOB 11 109

Links

Other LOB family TFs
Other Carica papaya TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_fgenesh1_kg.C_330028 Phytophthora capsici estExt_fgenesh1_kg.C_330028 N 0.000
F443_15099 Phytophthora parasitica F443_15099 N 0.000
F443_15102 Phytophthora parasitica F443_15102 N 0.000
fgenesh_scip_prom.28083.3324 Phytophthora lateralis fgenesh_scip_prom.28083.3324 N 0.000
fgenesh_scip_prom.46568.532 Phytophthora kernoviae fgenesh_scip_prom.46568.532 N 0.000
HpaG811344 Hyaloperonospora arabidopsidis HpaG811344 N 0.000
maker-pve_contig_551-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_551-fgenesh-gene-0.0 N 0.000
Phyra75434 Phytophthora ramorum Phyra75434 N 0.000
Physo135095 Phytophthora sojae Physo135095 N 0.000
Physo135096 Phytophthora sojae Physo135096 N 0.000
Physo145373 Phytophthora sojae Physo145373 N 0.000
PITG_16850 Phytophthora infestans PITG_16850 N 0.000
PITG_16853 Phytophthora infestans PITG_16853 N 0.000