evm.TU.supercontig_1.339 (Carica papaya)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 evm.TU.supercontig_1.339 T246874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD23
M06964_2.00
Arabidopsis thaliana
NGCGNDRAWNNCGCN

NGCGNNWTYHNCGCN
Dap-seq
OMalley et al.(2016)
LBD23_col_a
0.717 0.717
LBD23
M06965_2.00
Arabidopsis thaliana
DGCGDDRRWNNCGCN

NGCGNNWYYHHCGCH
Dap-seq
OMalley et al.(2016)
LBD23_colamp_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_1.339 LOB 5 103

Links

Other LOB family TFs
Other Carica papaya TFs

Invalid Input OrderBy

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action