gene19355-v1.0-hybrid (Fragaria vesca)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gene19355-v1.0-hybrid T246918_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.869 0.869
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.869 0.869
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.859 0.859
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.859 0.859
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.727 0.727
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.727 0.727
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.727 0.727
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.717 0.717
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19355.1-v1.0-hybrid LOB 31 130

Links

Other LOB family TFs
Other Fragaria vesca TFs

360 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.000
Bo2g119240 Brassica oleracea Bo2g119240 I 0.000
Bo3g141510 Brassica oleracea Bo3g141510 I 0.000
Bo4g145670 Brassica oleracea Bo4g145670 I 0.000
Bo7g049880 Brassica oleracea Bo7g049880 I 0.000
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.000
Bra030325 Brassica rapa Bra030325 I 0.000
Bra031159 Brassica rapa Bra031159 I 0.000
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
CSP2 Arabidopsis thaliana AT4G38680 I 0.000
CSP4 Arabidopsis thaliana AT2G21060 D 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000