gene19356-v1.0-hybrid (Fragaria vesca)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gene19356-v1.0-hybrid T246919_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.818 0.818
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.818 0.818
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.818 0.818
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.818 0.818
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.768 0.768
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19356.1-v1.0-hybrid LOB 19 118

Links

Other LOB family TFs
Other Fragaria vesca TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.949
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.949
30174.m008897 Ricinus communis 30174.m008897 I 0.939
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.939
Pm017935 Prunus mume Pm017935 I 0.939
MDP0000429067 Malus domestica MDP0000429067 I 0.929
TCM_005497 Theobroma cacao TCM_005497 I 0.919
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.919
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.909
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.909
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.909
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.909
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.909
PK25573.1 Cannabis sativa PK25573.1 I 0.909
mgf020735m Mimulus guttatus mgf020735m I 0.899
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.899
Cla007069 Citrullus lanatus Cla007069 I 0.899
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.899
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.899
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.899
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.879
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.879
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.879
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.879
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.879
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.869
Ca_19598 Cicer arietinum Ca_19598 I 0.869
OBART03G10450 Oryza barthii OBART03G10450 I 0.869
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.869
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.869
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.869
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.869
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.869
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.869
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.869
OS03G0246900 Oryza sativa OS03G0246900 I 0.869
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.869
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.869
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.869
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.869
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.869
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.869
30174.m008898 Ricinus communis 30174.m008898 I 0.869
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.869
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.869
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.869
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.862
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.859
Pm017936 Prunus mume Pm017936 I 0.859
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.859
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.859
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.859
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.859
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.859
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.859
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.859
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.859
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.859
Cla007068 Citrullus lanatus Cla007068 I 0.859
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.859
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.848
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.848
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.838
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.838
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.838
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.828
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.828
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.828
Bra040311 Brassica rapa Bra040311 I 0.828
Bo4g195520 Brassica oleracea Bo4g195520 I 0.828
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.828
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.818
OB10G12360 Oryza brachyantha OB10G12360 I 0.818
Bo4g024620 Brassica oleracea Bo4g024620 I 0.818
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.818
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.818
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.818
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.818
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.818
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.818
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.818
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.818
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.818
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.818
LBD18 Arabidopsis thaliana AT2G45420 D 0.818
LBD19 Arabidopsis thaliana AT2G45410 D 0.818
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.818
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.809
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.808
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.808
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.808
Bra004910 Brassica rapa Bra004910 I 0.808
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.808
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.808
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.808
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.808
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.808
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
LBD31 Arabidopsis thaliana AT4G00210 I 0.798
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
Bra040312 Brassica rapa Bra040312 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.791
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.788
Bra008514 Brassica rapa Bra008514 I 0.788
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.788
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
Bo2g097560 Brassica oleracea Bo2g097560 I 0.788
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.788
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.788
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.778
Bo4g024610 Brassica oleracea Bo4g024610 I 0.778
Bo9g002160 Brassica oleracea Bo9g002160 I 0.778
Bra037323 Brassica rapa Bra037323 I 0.778
TCM_004106 Theobroma cacao TCM_004106 I 0.768
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.768
Ca_20428 Cicer arietinum Ca_20428 I 0.768
Cla021625 Citrullus lanatus Cla021625 I 0.768
MDP0000254224 Malus domestica MDP0000254224 I 0.768
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.768
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.768
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.768
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.768
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.768
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.768
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.768
LBD30 Arabidopsis thaliana AT4G00220 D 0.768
Bra004908 Brassica rapa Bra004908 I 0.768
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.768
Pm028642 Prunus mume Pm028642 I 0.758
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.758
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.758
TCM_025849 Theobroma cacao TCM_025849 I 0.758
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.758
TCM_005496 Theobroma cacao TCM_005496 I 0.758
OB03G20590 Oryza brachyantha OB03G20590 I 0.758
Bra037322 Brassica rapa Bra037322 I 0.758
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.758
MDP0000145761 Malus domestica MDP0000145761 I 0.758
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.758
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.758
Bo9g002150 Brassica oleracea Bo9g002150 I 0.758
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.758
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.758
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.758
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.758
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.758
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.747
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.747
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.747
PK23185.1 Cannabis sativa PK23185.1 I 0.747
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.747
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.747
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.747
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.747
mgf006429m Mimulus guttatus mgf006429m I 0.747
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.747
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
MDP0000322059 Malus domestica MDP0000322059 I 0.747
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.747
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.747
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.747
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.747
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.747
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.747
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.747
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.747
Ca_12213 Cicer arietinum Ca_12213 I 0.747
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.747
Pm020629 Prunus mume Pm020629 I 0.747
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.737
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.737
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.737
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.737
Ca_20429 Cicer arietinum Ca_20429 I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
Bra036436 Brassica rapa Bra036436 I 0.737
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.737
30072.m000955 Ricinus communis 30072.m000955 I 0.737
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.737
29883.m002035 Ricinus communis 29883.m002035 I 0.737
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.737
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.737
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.737
Cla002965 Citrullus lanatus Cla002965 I 0.737
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.737
LBD20 Arabidopsis thaliana AT3G03760 I 0.737
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.727
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.727
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.727
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.727
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.727
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.727
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.727
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.727
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.727
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.727
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.727
Bo3g036000 Brassica oleracea Bo3g036000 I 0.720
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
F775_04528 Aegilops tauschii F775_04528 I 0.717
F775_22967 Aegilops tauschii F775_22967 I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.717
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
Si015156m.g Setaria italica Si015156m.g I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.717
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.717
Cla006088 Citrullus lanatus Cla006088 I 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
Bo4g195510 Brassica oleracea Bo4g195510 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.707
Bra000257 Brassica rapa Bra000257 I 0.707
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707
Bo4g191530 Brassica oleracea Bo4g191530 I 0.707
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.707
Bra004693 Brassica rapa Bra004693 I 0.707
Bo4g016000 Brassica oleracea Bo4g016000 I 0.707
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.707
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.707
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.707
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.707
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.707
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.707
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.707
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.707
OS08G0563400 Oryza sativa OS08G0563400 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.707
Si019578m.g Setaria italica Si019578m.g I 0.707
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.707
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.707
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.707
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.707
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.707
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.707