gene25294-v1.0-hybrid (Fragaria vesca)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 gene25294-v1.0-hybrid T246929_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna25294.1-v1.0-hybrid LOB 61 159

Links

Other LOB family TFs
Other Fragaria vesca TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.960
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.960
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.960
Pm000938 Prunus mume Pm000938 I 0.960
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.949
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.949
MDP0000319331 Malus domestica MDP0000319331 I 0.949
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.949
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.949
30111.m000703 Ricinus communis 30111.m000703 I 0.939
TCM_041094 Theobroma cacao TCM_041094 I 0.939
MDP0000218986 Malus domestica MDP0000218986 I 0.939
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.939
MDP0000318244 Malus domestica MDP0000318244 I 0.939
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.939
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.939
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.929
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.929
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.929
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.929
TCM_043081 Theobroma cacao TCM_043081 I 0.929
PK27389.1 Cannabis sativa PK27389.1 I 0.929
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.929
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.929
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.919
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.919
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.919
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.919
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.919
Ca_14605 Cicer arietinum Ca_14605 I 0.919
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.919
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.919
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.909
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.909
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.909
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.909
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.909
Cla000556 Citrullus lanatus Cla000556 I 0.909
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.899
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.899
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.899
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.899
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.899
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.899
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.899
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.899
Ca_04287 Cicer arietinum Ca_04287 I 0.899
PK23777.1 Cannabis sativa PK23777.1 I 0.899
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.899
Cla020379 Citrullus lanatus Cla020379 I 0.889
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.889
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.889
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.889
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.889
Cla005134 Citrullus lanatus Cla005134 N 0.889
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.889
Pm018585 Prunus mume Pm018585 I 0.889
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.889
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.889
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.889
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.879
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.879
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.879
Bra011942 Brassica rapa Bra011942 N 0.879
Bo01039s010 Brassica oleracea Bo01039s010 N 0.879
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.879
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.879
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.879
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.879
Bo4g165420 Brassica oleracea Bo4g165420 N 0.869
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.869
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.869
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.869
LBD11 Arabidopsis thaliana AT2G28500 N 0.869
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.869
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.869
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.869
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.869
MDP0000123013 Malus domestica MDP0000123013 I 0.869
Bra035698 Brassica rapa Bra035698 N 0.869
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.869
MDP0000151784 Malus domestica MDP0000151784 I 0.869
mgf015666m Mimulus guttatus mgf015666m N 0.859
Ca_02507 Cicer arietinum Ca_02507 N 0.859
MDP0000879799 Malus domestica MDP0000879799 N 0.859
Bra018675 Brassica rapa Bra018675 N 0.859
Bo5g008590 Brassica oleracea Bo5g008590 N 0.859
MDP0000822986 Malus domestica MDP0000822986 I 0.859
mgf022524m Mimulus guttatus mgf022524m N 0.848
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.848
Bra000491 Brassica rapa Bra000491 N 0.848
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.848
Bo3g040220 Brassica oleracea Bo3g040220 N 0.848
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.848
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.848
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.848
OB05G11740 Oryza brachyantha OB05G11740 I 0.848
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.838
Bo8g112780 Brassica oleracea Bo8g112780 N 0.838
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.838
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.838
Si024430m.g Setaria italica Si024430m.g N 0.838
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.838
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.838
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.838
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.838
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.828
Bra031599 Brassica rapa Bra031599 N 0.828
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.828
Cla005133 Citrullus lanatus Cla005133 N 0.828
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.818
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.818
Si037280m.g Setaria italica Si037280m.g N 0.818
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.818
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.818
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.808
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.808
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.808
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.808
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.808
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.808
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.808
OB03G23270 Oryza brachyantha OB03G23270 N 0.808
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.808
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.798
OBART03G13260 Oryza barthii OBART03G13260 N 0.798
F775_02335 Aegilops tauschii F775_02335 N 0.798
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.798
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.798
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.798
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.798
OS03G0287400 Oryza sativa OS03G0287400 N 0.798
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.798
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.798
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.798
mgf019622m Mimulus guttatus mgf019622m N 0.798
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.788
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.788
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.778
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.778
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.778
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.778
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.778
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.768
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.768
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.758
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.758
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.747
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.747
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.737
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.727
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.727
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.727
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.727
mgf018189m Mimulus guttatus mgf018189m I 0.727
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.727
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.727
Ca_06548 Cicer arietinum Ca_06548 I 0.727
Ca_13575 Cicer arietinum Ca_13575 I 0.727
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.727
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.727
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.717
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.717
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.717
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.717
MDP0000121203 Malus domestica MDP0000121203 I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.717
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.717
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.717
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.717
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.717
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.717
F775_08326 Aegilops tauschii F775_08326 I 0.717
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.717
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.717
30169.m006340 Ricinus communis 30169.m006340 I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.717
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.717
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.717
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
PK24688.1 Cannabis sativa PK24688.1 I 0.707
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.707
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.707
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.707
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
TCM_029315 Theobroma cacao TCM_029315 I 0.707
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.707
TCM_042447 Theobroma cacao TCM_042447 I 0.707
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.707
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
Bra014907 Brassica rapa Bra014907 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.707
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.707
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.707
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.707
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.707
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.707
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.707
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.707
29729.m002278 Ricinus communis 29729.m002278 I 0.707
Pm018982 Prunus mume Pm018982 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.707
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.707
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.707
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.707