Gorai.004G219900 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.004G219900 T246956_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.798 0.798
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.798 0.798
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.798 0.798
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.758 0.758
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G219900.1 LOB 14 113

Links

Other LOB family TFs
Other Gossypium raimondii TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_004106 Theobroma cacao TCM_004106 I 0.848
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.848
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.848
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.838
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.838
Pm020629 Prunus mume Pm020629 I 0.838
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.838
MDP0000145761 Malus domestica MDP0000145761 I 0.838
MDP0000131964 Malus domestica MDP0000131964 I 0.828
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.828
29883.m002035 Ricinus communis 29883.m002035 I 0.828
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.828
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.828
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.828
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.828
Cla006088 Citrullus lanatus Cla006088 I 0.828
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.828
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.826
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.818
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.818
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.818
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.818
Ca_12213 Cicer arietinum Ca_12213 I 0.818
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.818
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.818
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.818
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.818
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.813
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.811
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.808
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.808
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.808
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.798
Bo4g191530 Brassica oleracea Bo4g191530 I 0.798
Bo4g016000 Brassica oleracea Bo4g016000 I 0.798
LBD16 Arabidopsis thaliana AT2G42430 D 0.798
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.798
Bra004693 Brassica rapa Bra004693 I 0.798
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.798
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.798
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.798
Bra016877 Brassica rapa Bra016877 I 0.798
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.798
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.789
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.788
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.788
Bra000257 Brassica rapa Bra000257 I 0.788
Bo3g036030 Brassica oleracea Bo3g036030 I 0.788
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.788
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
mgf026090m Mimulus guttatus mgf026090m I 0.781
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.778
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.778
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.778
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.778
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.778
Bo3g036000 Brassica oleracea Bo3g036000 I 0.774
MDP0000254224 Malus domestica MDP0000254224 I 0.772
TCM_005496 Theobroma cacao TCM_005496 I 0.772
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.768
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.768
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.768
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.768
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.768
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.768
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.768
30174.m008898 Ricinus communis 30174.m008898 I 0.768
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.768
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.768
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.768
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.768
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.768
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.768
Pm017936 Prunus mume Pm017936 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.768
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.759
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.758
OS02G0820500 Oryza sativa OS02G0820500 I 0.758
Bra040311 Brassica rapa Bra040311 I 0.758
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.758
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.758
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.758
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.758
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.758
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.758
OB10G12360 Oryza brachyantha OB10G12360 I 0.758
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.758
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.758
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.758
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.758
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.758
LBD18 Arabidopsis thaliana AT2G45420 D 0.758
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.758
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.758
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.758
Bo4g024620 Brassica oleracea Bo4g024620 I 0.758
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.758
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.758
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.756
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.755
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.747
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.747
OBART02G37570 Oryza barthii OBART02G37570 I 0.747
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.747
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.747
Bo4g195520 Brassica oleracea Bo4g195520 I 0.747
Bra004910 Brassica rapa Bra004910 I 0.747
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.747
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.747
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.747
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.747
OB02G44330 Oryza brachyantha OB02G44330 I 0.747
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.747
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.747
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.737
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.737
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.737
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.737
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.737
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.737
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.737
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.737
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.737
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.737
OS10G0162600 Oryza sativa OS10G0162600 I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
MDP0000429067 Malus domestica MDP0000429067 I 0.737
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.737
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.737
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.737
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.737
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.737
Pm017935 Prunus mume Pm017935 I 0.737
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.737
Si019578m.g Setaria italica Si019578m.g I 0.737
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.737
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.737
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.737
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.737
Bra001087 Brassica rapa Bra001087 I 0.735
OB03G20590 Oryza brachyantha OB03G20590 I 0.727
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.727
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.727
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.727
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.727
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.727
Carubv10018619m.g Capsella rubella Carubv10018619m.g I 0.727
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.727
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.727
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.727
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.727
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.727
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.727
PK25573.1 Cannabis sativa PK25573.1 I 0.727
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.725
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.719
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.717
mgf020735m Mimulus guttatus mgf020735m I 0.717
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.717
Cagra.0686s0035 Capsella grandiflora Cagra.0686s0035 I 0.717
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.717
Cla007069 Citrullus lanatus Cla007069 I 0.717
30072.m000955 Ricinus communis 30072.m000955 I 0.717
30174.m008897 Ricinus communis 30174.m008897 I 0.717
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.717
PK23380.1 Cannabis sativa PK23380.1 I 0.716
Ca_20429 Cicer arietinum Ca_20429 I 0.708
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.707
TCM_005497 Theobroma cacao TCM_005497 I 0.707
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.707
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.707
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.707
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.707
Pm028642 Prunus mume Pm028642 I 0.707
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.707