Gorai.007G091600 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.007G091600 T246968_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.828 0.828
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.828 0.828
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.788 0.788
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.788 0.788
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.747 0.747
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G091600.1 LOB 9 108

Links

Other LOB family TFs
Other Gossypium raimondii TFs

Invalid Input OrderBy

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action