Gorai.007G350300 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.007G350300 T246975_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.980 0.980
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G350300.1 LOB 12 110

Links

Other LOB family TFs
Other Gossypium raimondii TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.990
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.990
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.990
29929.m004500 Ricinus communis 29929.m004500 I 0.990
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.990
TCM_024217 Theobroma cacao TCM_024217 I 0.990
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.980
Bra039733 Brassica rapa Bra039733 I 0.980
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.980
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.980
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.980
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.980
Bo2g051420 Brassica oleracea Bo2g051420 I 0.980
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.980
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.980
LBD6 Arabidopsis thaliana AT1G65620 D 0.980
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.970
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.970
AS2 Vitis vinifera VIT_00s0340g00090 I 0.970
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.970
MDP0000273432 Malus domestica MDP0000273432 I 0.970
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.970
PK18922.1 Cannabis sativa PK18922.1 I 0.965
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.963
mgf014755m Mimulus guttatus mgf014755m I 0.960
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.960
MDP0000643326 Malus domestica MDP0000643326 I 0.960
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.949
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.949
Cla005851 Citrullus lanatus Cla005851 I 0.949
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.949
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.949
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.939
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.939
Ca_20200 Cicer arietinum Ca_20200 I 0.919
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.919
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.919
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.919
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.908
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.899
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.899
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.899
OS05G0417000 Oryza sativa OS05G0417000 I 0.899
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.899
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.889
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.889
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.889
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.889
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.889
Si002599m.g Setaria italica Si002599m.g I 0.889
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.879
OB05G24560 Oryza brachyantha OB05G24560 I 0.879
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.879
F775_21760 Aegilops tauschii F775_21760 I 0.879
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.869
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.869
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.869
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.869
F775_20715 Aegilops tauschii F775_20715 I 0.869
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.869
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.869
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.859
LBD6 Oryza sativa OS01G0889400 I 0.859
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.859
LBD6 Oryza indica BGIOSGA004955 I 0.859
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.859
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.859
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.859
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.859
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.859
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.859
OB01G48740 Oryza brachyantha OB01G48740 I 0.859
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.859
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.859
OBART01G39990 Oryza barthii OBART01G39990 I 0.859
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.848
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.848
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.838
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.838
Si024114m.g Setaria italica Si024114m.g I 0.838
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.828
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.828
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.818
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.818
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.818
TCM_000560 Theobroma cacao TCM_000560 I 0.818
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.818
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.818
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.818
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.818
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.818
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.818
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.808
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.808
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.808
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.808
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.808
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.808
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.808
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.808
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.808
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.808
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.808
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.798
Cla020438 Citrullus lanatus Cla020438 I 0.798
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.798
MDP0000562305 Malus domestica MDP0000562305 I 0.798
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.798
Pm026450 Prunus mume Pm026450 I 0.798
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.798
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.788
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.788
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.788
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.788
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.788
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.788
LBD36 Arabidopsis thaliana AT5G66870 I 0.788
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.788
Bo2g167820 Brassica oleracea Bo2g167820 I 0.778
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.778
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.778
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.778
29676.m001633 Ricinus communis 29676.m001633 I 0.778
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.778
Bo7g064360 Brassica oleracea Bo7g064360 I 0.778
Bra012112 Brassica rapa Bra012112 I 0.778
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.778
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.778
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.778
mgf004296m Mimulus guttatus mgf004296m I 0.768
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.768
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.768
Ca_02125 Cicer arietinum Ca_02125 I 0.768
Ca_02124 Cicer arietinum Ca_02124 I 0.768
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.768
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.768
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.768
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.768
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.768
Ca_11161 Cicer arietinum Ca_11161 I 0.768
MDP0000777060 Malus domestica MDP0000777060 I 0.768
MDP0000133546 Malus domestica MDP0000133546 I 0.768
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.758
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.758
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.758
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.758
MDP0000254288 Malus domestica MDP0000254288 I 0.758
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.758
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.758
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.758
Pm024312 Prunus mume Pm024312 I 0.758
Bo9g017470 Brassica oleracea Bo9g017470 I 0.758
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.758
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.758
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.758
F775_25656 Aegilops tauschii F775_25656 I 0.758
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.758
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.758
MDP0000130659 Malus domestica MDP0000130659 I 0.758
MDP0000310871 Malus domestica MDP0000310871 I 0.758
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.758
30147.m013890 Ricinus communis 30147.m013890 I 0.758
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.758
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.758
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.758
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.758
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.758
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.758
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.758
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.758
Si002632m.g Setaria italica Si002632m.g I 0.758
TCM_012190 Theobroma cacao TCM_012190 I 0.758
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.758
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.758
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.758
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.758
OS01G0169400 Oryza sativa OS01G0169400 I 0.758
Pm010483 Prunus mume Pm010483 I 0.758
OB01G14220 Oryza brachyantha OB01G14220 I 0.758
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.758
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.758
LOB Vitis vinifera VIT_17s0000g09010 I 0.758
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.758
Ca_08824 Cicer arietinum Ca_08824 I 0.758
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.758
Cla019510 Citrullus lanatus Cla019510 I 0.758
OBART01G04470 Oryza barthii OBART01G04470 I 0.758
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.758
LOB Arabidopsis lyrata scaffold_802995.1 I 0.747
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.747
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.747
Bra038606 Brassica rapa Bra038606 I 0.747
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.747
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.747
Bo3g104760 Brassica oleracea Bo3g104760 I 0.747
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.747
LOB Arabidopsis thaliana AT5G63090 D 0.747
MDP0000197526 Malus domestica MDP0000197526 I 0.747
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.747
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.747
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.747
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.747
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.747
Ca_07463 Cicer arietinum Ca_07463 I 0.747
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.747
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.747
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.747
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.747
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.737
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.737
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.737
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.737
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.727
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.727
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.727
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.727
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.727
OS03G0612400 Oryza sativa OS03G0612400 I 0.727
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.727
Bo4g151770 Brassica oleracea Bo4g151770 I 0.727
MDP0000848210 Malus domestica MDP0000848210 I 0.727
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.727
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.727
mgf003146m Mimulus guttatus mgf003146m I 0.727
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.727
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.727
Cla017388 Citrullus lanatus Cla017388 I 0.727
Bra032153 Brassica rapa Bra032153 I 0.727
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.727
PK21510.1 Cannabis sativa PK21510.1 I 0.727
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.727
Cla003499 Citrullus lanatus Cla003499 I 0.727
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.727
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.727
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.727
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.722
PK21617.1 Cannabis sativa PK21617.1 I 0.717
PK26472.1 Cannabis sativa PK26472.1 I 0.717
29917.m001993 Ricinus communis 29917.m001993 I 0.717
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.717
Ca_24372 Cicer arietinum Ca_24372 I 0.717
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.717
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.717
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.717
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.717
OB03G34080 Oryza brachyantha OB03G34080 I 0.717
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.717
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.717
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.717
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.717
Pm015649 Prunus mume Pm015649 I 0.717
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.717
Bra035860 Brassica rapa Bra035860 I 0.717
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.717
TCM_016952 Theobroma cacao TCM_016952 I 0.717
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.717
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.717
mgf024603m Mimulus guttatus mgf024603m I 0.717
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.717
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.717
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.713
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.707
LBD10 Arabidopsis thaliana AT2G23660 I 0.707
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.707
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.707
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.707
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.707
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.707
Lus10009337.g Linum usitatissimum Lus10009337.g I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.707
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.707
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.707
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.707
Lus10019633.g Linum usitatissimum Lus10019633.g I 0.707
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.707
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703
ONIVA05G17300 Oryza nivara ONIVA05G17300 N 0.701