Gorai.009G295000 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.009G295000 T246987_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G295000.1 LOB 49 147
Gorai.009G295000.2 LOB 44 142

Links

Other LOB family TFs
Other Gossypium raimondii TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD15 Vitis vinifera VIT_13s0067g02380 I 1.000
cassava15554.m1 Manihot esculenta cassava15554.m1 I 1.000
TCM_045438 Theobroma cacao TCM_045438 I 1.000
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.990
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.990
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.980
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.980
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.980
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.980
29729.m002335 Ricinus communis 29729.m002335 I 0.980
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.980
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.980
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.980
PK17217.1 Cannabis sativa PK17217.1 I 0.980
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.970
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.960
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.960
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.960
LBD15 Arabidopsis thaliana AT2G40470 I 0.960
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.960
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.960
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.960
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.960
MDP0000278334 Malus domestica MDP0000278334 I 0.960
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.949
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.949
Bo3g034980 Brassica oleracea Bo3g034980 I 0.949
Ca_04126 Cicer arietinum Ca_04126 I 0.949
Bra000188 Brassica rapa Bra000188 I 0.949
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.949
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.939
Bra004572 Brassica rapa Bra004572 I 0.939
Cla007391 Citrullus lanatus Cla007391 I 0.939
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.939
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.939
Bo4g190210 Brassica oleracea Bo4g190210 I 0.939
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.939
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.939
Bo4g012620 Brassica oleracea Bo4g012620 I 0.939
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.939
PK21617.1 Cannabis sativa PK21617.1 I 0.935
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.929
TCM_042262 Theobroma cacao TCM_042262 I 0.929
Bra016992 Brassica rapa Bra016992 I 0.929
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.922
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.919
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.919
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.919
Ca_12420 Cicer arietinum Ca_12420 I 0.919
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.909
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.909
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.909
mgf011471m Mimulus guttatus mgf011471m I 0.909
OB05G14280 Oryza brachyantha OB05G14280 I 0.908
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.899
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.899
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.899
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.899
29957.m001411 Ricinus communis 29957.m001411 I 0.899
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.890
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.889
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.889
Ca_15642 Cicer arietinum Ca_15642 I 0.889
OS05G0165450 Oryza sativa OS05G0165450 I 0.889
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.889
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.889
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.889
OBART05G04570 Oryza barthii OBART05G04570 I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.889
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.889
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.889
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.889
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.889
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Si012018m.g Setaria italica Si012018m.g I 0.879
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
Pm000277 Prunus mume Pm000277 I 0.869
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.869
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.869
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.869
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.869
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.869
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.869
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.869
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.869
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.869
F775_52636 Aegilops tauschii F775_52636 I 0.869
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
OS01G0825000 Oryza sativa OS01G0825000 I 0.859
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.859
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.859
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.859
OBART01G35680 Oryza barthii OBART01G35680 I 0.859
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.859
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.859
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.859
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.859
Si004575m.g Setaria italica Si004575m.g I 0.859
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.859
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.859
PK03716.1 Cannabis sativa PK03716.1 I 0.853
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.848
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.848
Bo4g190140 Brassica oleracea Bo4g190140 I 0.842
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.838
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.814
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.763
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.747
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.747
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.737
30169.m006340 Ricinus communis 30169.m006340 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
Si026864m.g Setaria italica Si026864m.g I 0.737
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.737
TCM_032557 Theobroma cacao TCM_032557 I 0.737
Pm011040 Prunus mume Pm011040 I 0.727
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.727
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.727
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.727
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.727
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.727
MDP0000268890 Malus domestica MDP0000268890 I 0.727
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.727
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.727
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
MDP0000284409 Malus domestica MDP0000284409 I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
MDP0000121203 Malus domestica MDP0000121203 I 0.717
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.717
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
LBD4 Arabidopsis thaliana AT1G31320 D 0.717
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.717
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
Ca_13575 Cicer arietinum Ca_13575 I 0.717
Ca_12450 Cicer arietinum Ca_12450 I 0.717
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.717
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.717
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.717
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.708
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.707
PK24688.1 Cannabis sativa PK24688.1 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.707
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
Ca_08998 Cicer arietinum Ca_08998 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.707
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
Bra014907 Brassica rapa Bra014907 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.707
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.707
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.707
TCM_029315 Theobroma cacao TCM_029315 I 0.707
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
PK18922.1 Cannabis sativa PK18922.1 I 0.702