Gorai.013G002900 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.013G002900 T247004_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G002900.1 LOB 43 141

Links

Other LOB family TFs
Other Gossypium raimondii TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK27389.1 Cannabis sativa PK27389.1 I 0.939
TCM_041094 Theobroma cacao TCM_041094 I 0.939
30111.m000703 Ricinus communis 30111.m000703 I 0.939
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.929
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.929
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.919
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.919
Ca_14605 Cicer arietinum Ca_14605 I 0.919
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.919
Pm000938 Prunus mume Pm000938 I 0.919
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.919
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.909
Cla000556 Citrullus lanatus Cla000556 I 0.909
MDP0000319331 Malus domestica MDP0000319331 I 0.909
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.909
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.909
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.909
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.909
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.909
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.899
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.899
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.899
MDP0000318244 Malus domestica MDP0000318244 I 0.899
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.899
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.899
MDP0000218986 Malus domestica MDP0000218986 I 0.899
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.889
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.889
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.889
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.889
PK23777.1 Cannabis sativa PK23777.1 I 0.889
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.889
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.889
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.889
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.889
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.889
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.889
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.889
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.889
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.889
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.889
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.889
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.879
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.879
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.879
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.879
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.879
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.879
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.879
Ca_04287 Cicer arietinum Ca_04287 I 0.879
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.879
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.879
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.879
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.869
Cla020379 Citrullus lanatus Cla020379 I 0.869
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.869
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.869
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.869
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.869
Bo5g008590 Brassica oleracea Bo5g008590 N 0.869
Bra000491 Brassica rapa Bra000491 N 0.869
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.869
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.869
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.869
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.869
LBD11 Arabidopsis thaliana AT2G28500 N 0.869
Bra018675 Brassica rapa Bra018675 N 0.869
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.869
TCM_043081 Theobroma cacao TCM_043081 I 0.869
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.869
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.859
MDP0000879799 Malus domestica MDP0000879799 N 0.859
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.859
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.859
Bo01039s010 Brassica oleracea Bo01039s010 N 0.859
Pm018585 Prunus mume Pm018585 I 0.859
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.848
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.848
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.848
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.848
Bo4g165420 Brassica oleracea Bo4g165420 N 0.848
mgf015666m Mimulus guttatus mgf015666m N 0.848
Bo3g040220 Brassica oleracea Bo3g040220 N 0.848
Bra011942 Brassica rapa Bra011942 N 0.848
MDP0000151784 Malus domestica MDP0000151784 I 0.848
MDP0000123013 Malus domestica MDP0000123013 I 0.848
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.848
OB05G11740 Oryza brachyantha OB05G11740 I 0.848
Bra035698 Brassica rapa Bra035698 N 0.848
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.848
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.848
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.848
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.848
MDP0000822986 Malus domestica MDP0000822986 I 0.848
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.838
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.838
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.838
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.838
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.838
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.838
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.838
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.838
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.830
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.828
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.828
Si024430m.g Setaria italica Si024430m.g N 0.828
Cla005134 Citrullus lanatus Cla005134 N 0.828
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.828
Bo8g112780 Brassica oleracea Bo8g112780 N 0.828
Si037280m.g Setaria italica Si037280m.g N 0.828
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.828
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.828
Ca_02507 Cicer arietinum Ca_02507 N 0.818
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.818
OBART03G13260 Oryza barthii OBART03G13260 N 0.818
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.818
OB03G23270 Oryza brachyantha OB03G23270 N 0.818
Bra031599 Brassica rapa Bra031599 N 0.818
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.818
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.818
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.818
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.818
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.818
OS03G0287400 Oryza sativa OS03G0287400 N 0.818
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.818
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.818
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.809
mgf022524m Mimulus guttatus mgf022524m N 0.808
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.808
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.808
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.808
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.808
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.808
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.798
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.798
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.798
F775_02335 Aegilops tauschii F775_02335 N 0.798
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.788
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.788
mgf019622m Mimulus guttatus mgf019622m N 0.788
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
Cla005133 Citrullus lanatus Cla005133 N 0.788
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.778
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.778
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.768
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.758
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.750
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.747
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.747
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.747
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.747
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.747
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.747
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.747
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.737
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.737
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.737
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.737
Cla013678 Citrullus lanatus Cla013678 I 0.737
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
PK11564.1 Cannabis sativa PK11564.1 I 0.737
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.737
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.737
Pm011040 Prunus mume Pm011040 I 0.737
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.737
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.737
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.737
MDP0000284409 Malus domestica MDP0000284409 I 0.737
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
TCM_032557 Theobroma cacao TCM_032557 I 0.737
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.737
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.737
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.737
30169.m006340 Ricinus communis 30169.m006340 I 0.737
Ca_13575 Cicer arietinum Ca_13575 I 0.737
MDP0000268890 Malus domestica MDP0000268890 I 0.737
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.737
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.727
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.727
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.727
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.727
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.727
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.727
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.727
mgf018189m Mimulus guttatus mgf018189m I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.727
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.727
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.727
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.727
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.727
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.727
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.727
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.727
MDP0000121203 Malus domestica MDP0000121203 I 0.727
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.727
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
Bra014907 Brassica rapa Bra014907 I 0.717
PK24688.1 Cannabis sativa PK24688.1 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.717
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.717
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.717
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
TCM_029315 Theobroma cacao TCM_029315 I 0.717
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.717
Ca_06548 Cicer arietinum Ca_06548 I 0.717
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.717
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.717
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.717
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.717
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.717
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.717
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.717
MDP0000183071 Malus domestica MDP0000183071 N 0.710
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.707
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
Bo7g041000 Brassica oleracea Bo7g041000 I 0.707
F775_08326 Aegilops tauschii F775_08326 I 0.707
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.707
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.707
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.707
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.707
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.707
mgf022958m Mimulus guttatus mgf022958m I 0.707
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.707
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.707
Cla005598 Citrullus lanatus Cla005598 I 0.707
Pm018982 Prunus mume Pm018982 I 0.707
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.707