Gorai.013G005900 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.013G005900 T247005_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.828 0.828
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.828 0.828
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G005900.1 LOB 48 146

Links

Other LOB family TFs
Other Gossypium raimondii TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK17217.1 Cannabis sativa PK17217.1 I 0.960
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.960
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.960
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.960
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.960
TCM_045438 Theobroma cacao TCM_045438 I 0.960
PK21617.1 Cannabis sativa PK21617.1 I 0.957
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.949
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.949
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.949
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.939
29729.m002335 Ricinus communis 29729.m002335 I 0.939
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.939
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.939
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.939
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.939
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.939
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.939
MDP0000278334 Malus domestica MDP0000278334 I 0.929
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.929
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.919
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.919
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.919
Bo4g190210 Brassica oleracea Bo4g190210 I 0.919
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.919
Cla007391 Citrullus lanatus Cla007391 I 0.919
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.919
LBD15 Arabidopsis thaliana AT2G40470 I 0.919
Ca_04126 Cicer arietinum Ca_04126 I 0.919
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
TCM_042262 Theobroma cacao TCM_042262 I 0.909
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.909
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
Bo3g034980 Brassica oleracea Bo3g034980 I 0.909
Bo4g012620 Brassica oleracea Bo4g012620 I 0.909
Bra000188 Brassica rapa Bra000188 I 0.909
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.909
Bra004572 Brassica rapa Bra004572 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.909
MDP0000167580 Malus domestica MDP0000167580 I 0.900
mgf011471m Mimulus guttatus mgf011471m I 0.899
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.899
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.899
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.899
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.899
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.899
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.899
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
Ca_12420 Cicer arietinum Ca_12420 I 0.899
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.899
Pm019028 Prunus mume Pm019028 I 0.891
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.889
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.889
Bra016992 Brassica rapa Bra016992 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.889
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.889
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.882
Ca_15642 Cicer arietinum Ca_15642 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
29957.m001411 Ricinus communis 29957.m001411 I 0.879
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
OB05G14280 Oryza brachyantha OB05G14280 I 0.874
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.869
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
Pm000277 Prunus mume Pm000277 I 0.869
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.869
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.863
F775_25790 Aegilops tauschii F775_25790 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
PK05388.1 Cannabis sativa PK05388.1 I 0.857
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.849
Si004575m.g Setaria italica Si004575m.g I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.838
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.838
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
F775_52636 Aegilops tauschii F775_52636 I 0.828
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
Bra018320 Brassica rapa Bra018320 I 0.828
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
PK03716.1 Cannabis sativa PK03716.1 I 0.824
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
PK17019.1 Cannabis sativa PK17019.1 I 0.765
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
mgf026046m Mimulus guttatus mgf026046m I 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.734
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.727
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.727
30169.m006340 Ricinus communis 30169.m006340 I 0.727
Si026864m.g Setaria italica Si026864m.g I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
Ca_12450 Cicer arietinum Ca_12450 I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
Ca_13575 Cicer arietinum Ca_13575 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Cla006731 Citrullus lanatus Cla006731 I 0.709
PK11564.1 Cannabis sativa PK11564.1 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703