Lus10001139.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10001139.g T247009_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001139 LOB 20 77

Links

Other LOB family TFs
Other Linum usitatissimum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla017388 Citrullus lanatus Cla017388 I 0.776
Ca_24372 Cicer arietinum Ca_24372 I 0.776
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.776
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.776
MDP0000848210 Malus domestica MDP0000848210 I 0.776
Cla010600 Citrullus lanatus Cla010600 I 0.776
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.759
mgf024603m Mimulus guttatus mgf024603m I 0.759
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.759
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.741
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.741
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.741
30147.m013890 Ricinus communis 30147.m013890 I 0.741
LOB Vitis vinifera VIT_17s0000g09010 I 0.741
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.741
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.741
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.741
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.724
Si002632m.g Setaria italica Si002632m.g I 0.724
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.724
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.724
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.724
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.724
F775_25656 Aegilops tauschii F775_25656 I 0.724
OB01G14220 Oryza brachyantha OB01G14220 I 0.724
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.724
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.724
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.724
Ca_07463 Cicer arietinum Ca_07463 I 0.724
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.724
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.724
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.722
PK21617.1 Cannabis sativa PK21617.1 I 0.717
LBD25 Arabidopsis thaliana AT3G27650 I 0.707
mgf003146m Mimulus guttatus mgf003146m I 0.707
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.707
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.707
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.707
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.707