Lus10009298.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10009298.g T247020_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.808 0.808
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.808 0.808
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.808 0.808
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.808 0.808
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.758 0.758
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009298 LOB 18 117

Links

Other LOB family TFs
Other Linum usitatissimum TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.919
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.909
Pm017935 Prunus mume Pm017935 I 0.909
PK25573.1 Cannabis sativa PK25573.1 I 0.909
Cla007069 Citrullus lanatus Cla007069 I 0.909
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.899
MDP0000429067 Malus domestica MDP0000429067 I 0.899
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.889
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.879
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.879
mgf020735m Mimulus guttatus mgf020735m I 0.879
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.879
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.879
TCM_005497 Theobroma cacao TCM_005497 I 0.879
30174.m008897 Ricinus communis 30174.m008897 I 0.879
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.869
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.869
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.869
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.869
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.859
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.848
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.848
Ca_19598 Cicer arietinum Ca_19598 I 0.848
30174.m008898 Ricinus communis 30174.m008898 I 0.848
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.848
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.848
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.848
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.848
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.848
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.848
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.848
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.848
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.838
Pm017936 Prunus mume Pm017936 I 0.838
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.838
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.838
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.838
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.838
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.838
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.838
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.838
OBART03G10450 Oryza barthii OBART03G10450 I 0.838
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.838
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.838
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.838
Cla007068 Citrullus lanatus Cla007068 I 0.838
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.838
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.838
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.838
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.838
OS03G0246900 Oryza sativa OS03G0246900 I 0.838
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.838
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.830
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.828
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.828
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.828
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.828
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.828
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.828
OB10G12360 Oryza brachyantha OB10G12360 I 0.828
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.828
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.828
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.828
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.828
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.828
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.818
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.818
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.818
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.818
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.818
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.808
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.808
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.808
LBD18 Arabidopsis thaliana AT2G45420 D 0.808
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.808
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.808
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.808
OS10G0162600 Oryza sativa OS10G0162600 I 0.808
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.808
Bra040311 Brassica rapa Bra040311 I 0.808
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.808
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.808
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.808
Bo4g024620 Brassica oleracea Bo4g024620 I 0.808
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.808
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.808
LBD19 Arabidopsis thaliana AT2G45410 D 0.808
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.808
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.808
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.808
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.808
Bo4g195520 Brassica oleracea Bo4g195520 I 0.808
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.798
Bra004910 Brassica rapa Bra004910 I 0.798
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.798
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.798
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.798
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.798
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.798
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.798
TCM_005496 Theobroma cacao TCM_005496 I 0.793
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.791
LBD31 Arabidopsis thaliana AT4G00210 I 0.788
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.788
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.788
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.788
Bo4g195510 Brassica oleracea Bo4g195510 I 0.787
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.787
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.778
Bra040312 Brassica rapa Bra040312 I 0.778
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.778
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.778
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.778
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.768
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.768
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.758
Bo4g024610 Brassica oleracea Bo4g024610 I 0.758
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.758
Bo9g002160 Brassica oleracea Bo9g002160 I 0.758
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.758
Bra037323 Brassica rapa Bra037323 I 0.758
LBD30 Arabidopsis thaliana AT4G00220 D 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.758
Bra004908 Brassica rapa Bra004908 I 0.747
Bo2g097560 Brassica oleracea Bo2g097560 I 0.747
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.747
Bra008514 Brassica rapa Bra008514 I 0.747
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.747
MDP0000254224 Malus domestica MDP0000254224 I 0.747
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.747
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.739
Bra037322 Brassica rapa Bra037322 I 0.737
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.737
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.737
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.737
Cla021625 Citrullus lanatus Cla021625 I 0.737
Ca_20428 Cicer arietinum Ca_20428 I 0.737
Bo9g002150 Brassica oleracea Bo9g002150 I 0.737
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.737
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.737
Ca_20429 Cicer arietinum Ca_20429 I 0.737
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.737
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
Si015156m.g Setaria italica Si015156m.g I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.727
PK23185.1 Cannabis sativa PK23185.1 I 0.727
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.727
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.727
OB03G20590 Oryza brachyantha OB03G20590 I 0.727
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.727
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.717
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.717
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.717
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.717
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.717
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.717
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.717
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.717
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.717
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.717
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.717
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.717
OS08G0563400 Oryza sativa OS08G0563400 I 0.717
OBART08G23860 Oryza barthii OBART08G23860 I 0.717
Pm020629 Prunus mume Pm020629 I 0.717
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.717
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.717
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.717
OB08G30680 Oryza brachyantha OB08G30680 I 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
LBD20 Arabidopsis thaliana AT3G03760 I 0.707
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.707
Bo1g153580 Brassica oleracea Bo1g153580 I 0.707
Ca_12213 Cicer arietinum Ca_12213 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Bra036436 Brassica rapa Bra036436 I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.707
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.707
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
F775_22967 Aegilops tauschii F775_22967 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.707
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.707
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
mgf006429m Mimulus guttatus mgf006429m I 0.707
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707