Lus10009337.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10009337.g T247022_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009337 LOB 12 110

Links

Other LOB family TFs
Other Linum usitatissimum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10019633.g Linum usitatissimum Lus10019633.g I 1.000
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.788
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.788
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.778
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.778
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.768
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.768
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.768
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.768
Pm026450 Prunus mume Pm026450 I 0.768
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.768
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.768
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.768
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.768
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.768
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.768
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.758
LBD36 Arabidopsis thaliana AT5G66870 I 0.758
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.758
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.758
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.758
MDP0000310871 Malus domestica MDP0000310871 I 0.758
Pm010483 Prunus mume Pm010483 I 0.747
MDP0000562305 Malus domestica MDP0000562305 I 0.747
MDP0000777060 Malus domestica MDP0000777060 I 0.747
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.747
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.747
TCM_000560 Theobroma cacao TCM_000560 I 0.747
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.747
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.747
Bo7g064360 Brassica oleracea Bo7g064360 I 0.737
Bra012112 Brassica rapa Bra012112 I 0.737
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.737
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.737
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.737
Bo2g167820 Brassica oleracea Bo2g167820 I 0.737
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.737
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.727
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.727
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.727
MDP0000197526 Malus domestica MDP0000197526 I 0.727
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.727
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.727
mgf004296m Mimulus guttatus mgf004296m I 0.727
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.717
Bra039733 Brassica rapa Bra039733 I 0.717
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.717
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.717
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.717
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.717
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.717
Bo2g051420 Brassica oleracea Bo2g051420 I 0.717
TCM_024217 Theobroma cacao TCM_024217 I 0.717
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.717
Ca_11161 Cicer arietinum Ca_11161 I 0.717
LBD6 Arabidopsis thaliana AT1G65620 D 0.717
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.717
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.717
29929.m004500 Ricinus communis 29929.m004500 I 0.717
29676.m001633 Ricinus communis 29676.m001633 I 0.717
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.717
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.717
Si036905m.g Setaria italica Si036905m.g I 0.717
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.717
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.717
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
MDP0000643326 Malus domestica MDP0000643326 I 0.707
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
Cla020438 Citrullus lanatus Cla020438 I 0.707
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.707