Lus10009930.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10009930.g T247024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.909 0.909
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.909 0.909
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009930 LOB 23 121

Links

Other LOB family TFs
Other Linum usitatissimum TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.970
PK21617.1 Cannabis sativa PK21617.1 I 0.957
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.929
mgf011471m Mimulus guttatus mgf011471m I 0.929
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.929
Bo4g172950 Brassica oleracea Bo4g172950 I 0.919
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.919
29957.m001411 Ricinus communis 29957.m001411 I 0.919
Bra021627 Brassica rapa Bra021627 I 0.919
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.919
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.909
TCM_042262 Theobroma cacao TCM_042262 I 0.909
PK17217.1 Cannabis sativa PK17217.1 I 0.909
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.909
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.909
TCM_045438 Theobroma cacao TCM_045438 I 0.909
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.909
29729.m002335 Ricinus communis 29729.m002335 I 0.909
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.909
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.909
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.909
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.909
Bra000188 Brassica rapa Bra000188 I 0.909
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.909
Bo4g059520 Brassica oleracea Bo4g059520 I 0.909
Bo3g034980 Brassica oleracea Bo3g034980 I 0.909
LBD13 Arabidopsis thaliana AT2G30340 D 0.909
LBD15 Arabidopsis thaliana AT2G40470 I 0.909
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.909
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.909
Bra018320 Brassica rapa Bra018320 I 0.909
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.909
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.909
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.909
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.904
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.899
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.899
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.899
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.899
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.899
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.899
Bra016992 Brassica rapa Bra016992 I 0.899
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.899
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.899
OB05G14280 Oryza brachyantha OB05G14280 I 0.897
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
Ca_04126 Cicer arietinum Ca_04126 I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.889
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.889
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.889
Bo4g190210 Brassica oleracea Bo4g190210 I 0.889
Cla007391 Citrullus lanatus Cla007391 I 0.889
Pm000277 Prunus mume Pm000277 I 0.889
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.879
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
MDP0000278334 Malus domestica MDP0000278334 I 0.879
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.879
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.879
Bra004572 Brassica rapa Bra004572 I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.879
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.879
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.879
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.869
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.869
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.863
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.859
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.859
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
OBART05G04570 Oryza barthii OBART05G04570 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.859
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.859
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.859
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.859
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
OS05G0165450 Oryza sativa OS05G0165450 I 0.859
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.859
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.859
PK03716.1 Cannabis sativa PK03716.1 I 0.853
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
Si004575m.g Setaria italica Si004575m.g I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
Ca_12420 Cicer arietinum Ca_12420 I 0.848
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
MDP0000167580 Malus domestica MDP0000167580 I 0.840
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.838
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.838
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.838
F775_52636 Aegilops tauschii F775_52636 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.808
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.788
Cla006731 Citrullus lanatus Cla006731 I 0.764
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PK29334.1 Cannabis sativa PK29334.1 I 0.719
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
Cla009336 Citrullus lanatus Cla009336 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
PK11564.1 Cannabis sativa PK11564.1 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707