Lus10013610.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10013610.g T247029_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.970 0.970
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013610 LOB 22 120

Links

Other LOB family TFs
Other Linum usitatissimum TFs

265 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.970
Bra039733 Brassica rapa Bra039733 I 0.970
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.970
29929.m004500 Ricinus communis 29929.m004500 I 0.970
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.970
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.970
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.970
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.970
TCM_024217 Theobroma cacao TCM_024217 I 0.970
Bo2g051420 Brassica oleracea Bo2g051420 I 0.970
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.970
LBD6 Arabidopsis thaliana AT1G65620 D 0.970
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.960
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.960
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.960
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.960
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.960
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.949
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.949
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.949
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.949
AS2 Vitis vinifera VIT_00s0340g00090 I 0.949
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.949
MDP0000273432 Malus domestica MDP0000273432 I 0.949
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.949
PK18922.1 Cannabis sativa PK18922.1 I 0.947
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.944
mgf014755m Mimulus guttatus mgf014755m I 0.939
MDP0000643326 Malus domestica MDP0000643326 I 0.939
Cla005851 Citrullus lanatus Cla005851 I 0.929
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.929
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.929
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.919
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.919
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.899
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.899
Ca_20200 Cicer arietinum Ca_20200 I 0.899
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.899
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.869
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.869
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.869
OS05G0417000 Oryza sativa OS05G0417000 I 0.869
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.869
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.862
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.859
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.859
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.859
Si002599m.g Setaria italica Si002599m.g I 0.859
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.859
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.859
OB05G24560 Oryza brachyantha OB05G24560 I 0.848
F775_21760 Aegilops tauschii F775_21760 I 0.848
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.848
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.848
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.848
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.838
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.838
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.838
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.838
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.838
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.838
F775_20715 Aegilops tauschii F775_20715 I 0.838
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.828
LBD6 Oryza indica BGIOSGA004955 I 0.828
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.828
LBD6 Oryza sativa OS01G0889400 I 0.828
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.828
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.828
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.828
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.828
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.828
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.828
OB01G48740 Oryza brachyantha OB01G48740 I 0.828
OBART01G39990 Oryza barthii OBART01G39990 I 0.828
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.818
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.818
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.818
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.818
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.808
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.808
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.808
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.808
F775_33210 Aegilops tauschii F775_33210 I 0.808
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.808
TCM_000560 Theobroma cacao TCM_000560 I 0.808
Si024114m.g Setaria italica Si024114m.g I 0.808
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.808
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.808
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.808
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.808
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.808
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.798
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.798
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.798
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.798
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.798
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.798
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.798
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.798
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.788
Cla020438 Citrullus lanatus Cla020438 I 0.788
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.788
Pm026450 Prunus mume Pm026450 I 0.788
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.788
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.788
MDP0000562305 Malus domestica MDP0000562305 I 0.788
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.788
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.788
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.788
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.778
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.778
Traes_1DL_B8551270A Triticum aestivum Traes_1DL_B8551270A I 0.778
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.778
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.778
LBD36 Arabidopsis thaliana AT5G66870 I 0.778
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.773
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.773
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.768
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.768
Bo2g167820 Brassica oleracea Bo2g167820 I 0.768
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.768
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.768
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.768
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.768
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.768
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.768
29676.m001633 Ricinus communis 29676.m001633 I 0.768
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.768
Ca_11161 Cicer arietinum Ca_11161 I 0.758
Bo7g064360 Brassica oleracea Bo7g064360 I 0.758
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.758
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.758
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.758
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.758
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.758
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.758
MDP0000777060 Malus domestica MDP0000777060 I 0.758
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.758
Bra012112 Brassica rapa Bra012112 I 0.758
MDP0000133546 Malus domestica MDP0000133546 I 0.758
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.747
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.747
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.747
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.747
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.747
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.747
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.747
MDP0000130659 Malus domestica MDP0000130659 I 0.747
MDP0000254288 Malus domestica MDP0000254288 I 0.747
Bo9g017470 Brassica oleracea Bo9g017470 I 0.747
OB01G14220 Oryza brachyantha OB01G14220 I 0.747
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.747
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.747
F775_25656 Aegilops tauschii F775_25656 I 0.747
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.747
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.747
mgf004296m Mimulus guttatus mgf004296m I 0.747
30147.m013890 Ricinus communis 30147.m013890 I 0.747
TCM_012190 Theobroma cacao TCM_012190 I 0.747
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.747
Si002632m.g Setaria italica Si002632m.g I 0.747
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.747
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.747
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.747
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.747
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.747
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.747
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.747
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.747
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.747
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.747
OS01G0169400 Oryza sativa OS01G0169400 I 0.747
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.747
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.747
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.747
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.747
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.747
LOB Vitis vinifera VIT_17s0000g09010 I 0.747
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.747
Ca_08824 Cicer arietinum Ca_08824 I 0.747
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.747
Pm010483 Prunus mume Pm010483 I 0.747
Cla019510 Citrullus lanatus Cla019510 I 0.747
Ca_02125 Cicer arietinum Ca_02125 I 0.747
Pm024312 Prunus mume Pm024312 I 0.747
Ca_02124 Cicer arietinum Ca_02124 I 0.747
OBART01G04470 Oryza barthii OBART01G04470 I 0.747
LPERR05G13240 Leersia perrieri LPERR05G13240 I 0.742
PK21617.1 Cannabis sativa PK21617.1 I 0.739
MDP0000197526 Malus domestica MDP0000197526 I 0.737
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.737
Bra038606 Brassica rapa Bra038606 I 0.737
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.737
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.737
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.737
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.737
LOB Arabidopsis lyrata scaffold_802995.1 I 0.737
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.737
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.737
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.737
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.737
LOB Arabidopsis thaliana AT5G63090 D 0.737
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.737
Ca_07463 Cicer arietinum Ca_07463 I 0.737
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.737
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.737
Bo3g104760 Brassica oleracea Bo3g104760 I 0.737
MDP0000310871 Malus domestica MDP0000310871 I 0.737
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.727
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.727
mgf024603m Mimulus guttatus mgf024603m I 0.727
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.717
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.717
MDP0000848210 Malus domestica MDP0000848210 I 0.717
OS03G0612400 Oryza sativa OS03G0612400 I 0.717
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.717
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.717
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.717
Cla017388 Citrullus lanatus Cla017388 I 0.717
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.717
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.717
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.717
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.717
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.717
Cla003499 Citrullus lanatus Cla003499 I 0.717
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.717
PK21510.1 Cannabis sativa PK21510.1 I 0.717
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.717
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.717
Bra035860 Brassica rapa Bra035860 I 0.717
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
OB03G34080 Oryza brachyantha OB03G34080 I 0.707
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.707
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.707
PK26472.1 Cannabis sativa PK26472.1 I 0.707
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.707
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.707
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.707
mgf016361m Mimulus guttatus mgf016361m I 0.707
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.707
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.707
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.707
mgf003146m Mimulus guttatus mgf003146m I 0.707
Ca_24372 Cicer arietinum Ca_24372 I 0.707
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.707
29917.m001993 Ricinus communis 29917.m001993 I 0.707
Pm015649 Prunus mume Pm015649 I 0.707
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.707
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.707
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.707
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.707
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.707
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.707
Bra032153 Brassica rapa Bra032153 I 0.707
TCM_016952 Theobroma cacao TCM_016952 I 0.707
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.707
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.707
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.707
Bo4g151770 Brassica oleracea Bo4g151770 I 0.707