CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Lus10019633.g
(
Linum usitatissimum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Lus10019633.g
T247037_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10019633
LOB
12
110
PCAACKFLRRKCTSECVFAPYFPPEQPSKFATVHRVFGASNIAKILNELPASDREDAVTSLFYEADARLRDPVYGCVGYISHLQQRLKELHFNLESARH
Links
Other
LOB
family TFs
Other
Linum usitatissimum
TFs
96 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10009337.g
Linum usitatissimum
Lus10009337.g
I
1.000
Lus10022463.g
Linum usitatissimum
Lus10022463.g
I
0.788
Lus10016769.g
Linum usitatissimum
Lus10016769.g
I
0.788
cassava16846.m1
Manihot esculenta
cassava16846.m1
I
0.778
gene24088-v1.0-hybrid
Fragaria vesca
gene24088-v1.0-hybrid
I
0.778
Thhalv10004535m.g
Eutrema salsugineum
Thhalv10004535m.g
I
0.768
Bostr.0568s0111
Boechera stricta
Bostr.0568s0111
I
0.768
POPTR_0005s14150
Populus trichocarpa
POPTR_0005s14150
I
0.768
SapurV1A.0428s0090
Salix purpurea
SapurV1A.0428s0090
I
0.768
Pm026450
Prunus mume
Pm026450
I
0.768
Carubv10026811m.g
Capsella rubella
Carubv10026811m.g
I
0.768
PRUPE_ppa026393mg
Prunus persica
PRUPE_ppa026393mg
I
0.768
Cagra.20099s0001
Capsella grandiflora
Cagra.20099s0001
I
0.768
ASL1
Arabidopsis lyrata
fgenesh2_kg.8__2729__AT5G66870.1
I
0.768
evm.TU.supercontig_6.423
Carica papaya
evm.TU.supercontig_6.423
I
0.768
gene30401-v1.0-hybrid
Fragaria vesca
gene30401-v1.0-hybrid
I
0.768
SapurV1A.0811s0020
Salix purpurea
SapurV1A.0811s0020
I
0.758
LBD36
Arabidopsis thaliana
AT5G66870
I
0.758
SapurV1A.0641s0140
Salix purpurea
SapurV1A.0641s0140
I
0.758
Lus10005313.g
Linum usitatissimum
Lus10005313.g
I
0.758
PRUPE_ppa015145mg
Prunus persica
PRUPE_ppa015145mg
I
0.758
MDP0000310871
Malus domestica
MDP0000310871
I
0.758
Pm010483
Prunus mume
Pm010483
I
0.747
MDP0000562305
Malus domestica
MDP0000562305
I
0.747
MDP0000777060
Malus domestica
MDP0000777060
I
0.747
Ciclev10027275m.g
Citrus clementina
Ciclev10027275m.g
I
0.747
cassava32690.m1
Manihot esculenta
cassava32690.m1
I
0.747
TCM_000560
Theobroma cacao
TCM_000560
I
0.747
orange1.1g039589m.g
Citrus sinensis
orange1.1g039589m.g
I
0.747
POPTR_0007s11460
Populus trichocarpa
POPTR_0007s11460
I
0.747
Bo7g064360
Brassica oleracea
Bo7g064360
I
0.737
Bra012112
Brassica rapa
Bra012112
I
0.737
cassava32691.m1
Manihot esculenta
cassava32691.m1
I
0.737
VIT_07s0197g00020
Vitis vinifera
VIT_07s0197g00020
I
0.737
Gorai.007G210500
Gossypium raimondii
Gorai.007G210500
I
0.737
Bo2g167820
Brassica oleracea
Bo2g167820
I
0.737
VIT_00s1247g00010
Vitis vinifera
VIT_00s1247g00010
I
0.737
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.727
Gorai.011G104600
Gossypium raimondii
Gorai.011G104600
I
0.727
Aquca_007_00083
Aquilegia coerulea
Aquca_007_00083
I
0.727
MDP0000197526
Malus domestica
MDP0000197526
I
0.727
cassava16840.m1
Manihot esculenta
cassava16840.m1
I
0.727
Cucsa.250570
Cucumis sativus
Cucsa.250570
I
0.727
mgf004296m
Mimulus guttatus
mgf004296m
I
0.727
Pavir.Ib03943
Panicum virgatum
Pavir.Ib03943
I
0.727
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.717
Bra039733
Brassica rapa
Bra039733
I
0.717
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.717
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.717
GSMUA_Achr6G04670_001
Musa acuminata
GSMUA_Achr6G04670_001
I
0.717
GLYMA06G11181
Glycine max
GLYMA06G11181
I
0.717
Solyc02g065150.1
Solanum lycopersicum
Solyc02g065150.1
I
0.717
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.717
Solyc02g090410.2
Solanum lycopersicum
Solyc02g090410.2
I
0.717
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.717
TCM_024217
Theobroma cacao
TCM_024217
I
0.717
Pavir.J09541
Panicum virgatum
Pavir.J09541
I
0.717
Ca_11161
Cicer arietinum
Ca_11161
I
0.717
LBD6
Arabidopsis thaliana
AT1G65620
D
0.717
MTR_3g073690
Medicago truncatula
MTR_3g073690
I
0.717
PGSC0003DMG402000764
Solanum tuberosum
PGSC0003DMG402000764
I
0.717
29929.m004500
Ricinus communis
29929.m004500
I
0.717
29676.m001633
Ricinus communis
29676.m001633
I
0.717
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.717
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.717
Si036905m.g
Setaria italica
Si036905m.g
I
0.717
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.717
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.717
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.717
PGSC0003DMG400010023
Solanum tuberosum
PGSC0003DMG400010023
I
0.717
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.707
MDP0000273432
Malus domestica
MDP0000273432
I
0.707
MDP0000643326
Malus domestica
MDP0000643326
I
0.707
Thhalv10000525m.g
Eutrema salsugineum
Thhalv10000525m.g
I
0.707
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.707
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.707
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.707
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.707
Si024114m.g
Setaria italica
Si024114m.g
I
0.707
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.707
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.707
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.707
GLYMA04G11991
Glycine max
GLYMA04G11991
I
0.707
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.707
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.707
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.707
Cla005851
Citrullus lanatus
Cla005851
I
0.707
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.707
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.707
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.707
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.707
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.707
Cla020438
Citrullus lanatus
Cla020438
I
0.707
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.707
mgf014755m
Mimulus guttatus
mgf014755m
I
0.707
Gorai.008G073400
Gossypium raimondii
Gorai.008G073400
I
0.707