Lus10029061.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10029061.g T247048_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10029061 LOB 29 128

Links

Other LOB family TFs
Other Linum usitatissimum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.960
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.838
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.828
Bo3g034980 Brassica oleracea Bo3g034980 I 0.828
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.828
Si012018m.g Setaria italica Si012018m.g I 0.828
Bra016992 Brassica rapa Bra016992 I 0.828
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
Cla007391 Citrullus lanatus Cla007391 I 0.828
Bra000188 Brassica rapa Bra000188 I 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.818
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.818
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.818
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.818
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.818
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.818
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.818
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.818
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.818
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.818
TCM_045438 Theobroma cacao TCM_045438 I 0.818
mgf020556m Mimulus guttatus mgf020556m I 0.818
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.818
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.818
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.818
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.818
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.818
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.818
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.818
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.818
29729.m002335 Ricinus communis 29729.m002335 I 0.818
mgf011471m Mimulus guttatus mgf011471m I 0.818
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.818
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.818
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.818
OS05G0165450 Oryza sativa OS05G0165450 I 0.818
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.818
Bo4g190210 Brassica oleracea Bo4g190210 I 0.818
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.818
PK17217.1 Cannabis sativa PK17217.1 I 0.818
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.818
OBART05G04570 Oryza barthii OBART05G04570 I 0.818
LBD15 Arabidopsis thaliana AT2G40470 I 0.818
F775_52636 Aegilops tauschii F775_52636 I 0.818
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.818
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.818
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.818
Ca_04126 Cicer arietinum Ca_04126 I 0.808
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.808
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.808
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.808
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.808
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.808
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.808
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.808
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.798
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.798
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.798
Bo4g012620 Brassica oleracea Bo4g012620 I 0.798
Bra004572 Brassica rapa Bra004572 I 0.798
Ca_12420 Cicer arietinum Ca_12420 I 0.798
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.798
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.798
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.798
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.798
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.798
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.798
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.798
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.788
29957.m001411 Ricinus communis 29957.m001411 I 0.788
OS01G0825000 Oryza sativa OS01G0825000 I 0.788
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.788
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.788
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.788
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.788
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.788
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.788
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.788
OBART01G35680 Oryza barthii OBART01G35680 I 0.788
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.788
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.788
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.788
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.788
TCM_042262 Theobroma cacao TCM_042262 I 0.788
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.788
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.788
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.788
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.788
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.788
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.788
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.788
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.778
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.778
MDP0000278334 Malus domestica MDP0000278334 I 0.778
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.778
Si004575m.g Setaria italica Si004575m.g I 0.778
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.778
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.778
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.778
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.778
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.778
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.778
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.778
Pm000277 Prunus mume Pm000277 I 0.778
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.778
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.778
F775_25790 Aegilops tauschii F775_25790 I 0.778
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.768
OB01G44400 Oryza brachyantha OB01G44400 I 0.768
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.768
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.768
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.768
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.768
Ca_15642 Cicer arietinum Ca_15642 I 0.768
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.768
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.758
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.758
OB05G14280 Oryza brachyantha OB05G14280 I 0.758
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.758
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.758
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.758
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.758
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.747
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.747
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.727
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.727
Bo4g190140 Brassica oleracea Bo4g190140 I 0.711