Lus10031285.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10031285.g T247050_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.778 0.778
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031285 LOB 6 104

Links

Other LOB family TFs
Other Linum usitatissimum TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00025p00248060 Amborella trichopoda AMTR_s00025p00248060 N 0.000
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.000
SIGD Arabidopsis thaliana AT5G13730 N 0.000
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.000
Bo2g011520 Brassica oleracea Bo2g011520 N 0.000
Bo9g166510 Brassica oleracea Bo9g166510 N 0.000
Bra008807 Brassica rapa Bra008807 N 0.000
Bra023430 Brassica rapa Bra023430 N 0.000
PK06863.1 Cannabis sativa PK06863.1 N 0.000
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.000
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.000
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.000
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.000
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.000
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.000
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.000
MDP0000266956 Malus domestica MDP0000266956 N 0.000
MDP0000235160 Malus domestica MDP0000235160 N 0.000
cassava43094.valid.m1 Manihot esculenta cassava43094.valid.m1 N 0.000
MTR_3g033420 Medicago truncatula MTR_3g033420 N 0.000
mgf003626m Mimulus guttatus mgf003626m N 0.000
GSMUA_Achr4G18530_001 Musa acuminata GSMUA_Achr4G18530_001 N 0.000
SIG4 Populus trichocarpa POPTR_0009s06210 N 0.000
Pm016510 Prunus mume Pm016510 N 0.000
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 0.000
PGSC0003DMG402006783 Solanum tuberosum PGSC0003DMG402006783 N 0.000
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.000