Lus10034208.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10034208.g T247057_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.818 0.818
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10034208 LOB 34 133

Links

Other LOB family TFs
Other Linum usitatissimum TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.960
PK21617.1 Cannabis sativa PK21617.1 I 0.913
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.877
OB05G14280 Oryza brachyantha OB05G14280 I 0.851
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
MDP0000167580 Malus domestica MDP0000167580 I 0.840
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.838
Cla007391 Citrullus lanatus Cla007391 I 0.838
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.828
29729.m002335 Ricinus communis 29729.m002335 I 0.828
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.828
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.828
OS05G0165450 Oryza sativa OS05G0165450 I 0.828
OBART05G04570 Oryza barthii OBART05G04570 I 0.828
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.828
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.828
TCM_045438 Theobroma cacao TCM_045438 I 0.828
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.828
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.828
Bra016992 Brassica rapa Bra016992 I 0.828
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.828
Bra021627 Brassica rapa Bra021627 I 0.828
Bra000188 Brassica rapa Bra000188 I 0.828
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
PK17217.1 Cannabis sativa PK17217.1 I 0.828
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.828
Bo3g034980 Brassica oleracea Bo3g034980 I 0.828
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.828
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
F775_52636 Aegilops tauschii F775_52636 I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.828
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.818
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.818
mgf011471m Mimulus guttatus mgf011471m I 0.818
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.818
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.818
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.818
mgf020556m Mimulus guttatus mgf020556m I 0.818
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.818
Si012018m.g Setaria italica Si012018m.g I 0.818
Bra018320 Brassica rapa Bra018320 I 0.818
Bo4g190210 Brassica oleracea Bo4g190210 I 0.818
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.818
LBD15 Arabidopsis thaliana AT2G40470 I 0.818
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.808
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.808
Ca_04126 Cicer arietinum Ca_04126 I 0.808
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.808
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.808
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.808
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.808
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.808
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.808
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.808
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.808
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.808
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.808
Ca_12420 Cicer arietinum Ca_12420 I 0.808
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.808
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.808
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.798
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.798
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.798
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.798
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.798
Bra004572 Brassica rapa Bra004572 I 0.798
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.798
Bo4g012620 Brassica oleracea Bo4g012620 I 0.798
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.798
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.798
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.798
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.798
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.798
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.798
TCM_042262 Theobroma cacao TCM_042262 I 0.798
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.798
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.798
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.798
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.798
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.788
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.788
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.788
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.788
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.788
OBART01G35680 Oryza barthii OBART01G35680 I 0.788
MDP0000278334 Malus domestica MDP0000278334 I 0.788
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.788
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.788
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.788
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.788
OS01G0825000 Oryza sativa OS01G0825000 I 0.788
29957.m001411 Ricinus communis 29957.m001411 I 0.788
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.788
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.788
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.788
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.788
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
PK05388.1 Cannabis sativa PK05388.1 I 0.786
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.779
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.778
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.778
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.778
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.778
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.778
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.778
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.778
Pm000277 Prunus mume Pm000277 I 0.778
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.778
Si004575m.g Setaria italica Si004575m.g I 0.778
F775_25790 Aegilops tauschii F775_25790 I 0.778
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.778
Ca_15642 Cicer arietinum Ca_15642 I 0.778
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.778
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.768
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.768
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.768
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.768
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.768
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.768
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.768
OB01G44400 Oryza brachyantha OB01G44400 I 0.768
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.768
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.758
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.758
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.758
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.758
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.737
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.737
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
Pm019028 Prunus mume Pm019028 I 0.709
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702