MDP0000151784 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000151784 T247080_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000151784 LOB 75 173

Links

Other LOB family TFs
Other Malus domestica TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.909
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.899
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.929
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.899
30169.m006340 Ricinus communis 30169.m006340 I 0.707
30111.m000703 Ricinus communis 30111.m000703 I 0.899
Pm018585 Prunus mume Pm018585 I 0.919
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.848
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.798
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.899
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
mgf026046m Mimulus guttatus mgf026046m I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
Pm011040 Prunus mume Pm011040 I 0.707
Pm000938 Prunus mume Pm000938 I 0.879
Cla020379 Citrullus lanatus Cla020379 I 0.899
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.717
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.707
TCM_043081 Theobroma cacao TCM_043081 I 0.899
TCM_041094 Theobroma cacao TCM_041094 I 0.899
TCM_032557 Theobroma cacao TCM_032557 I 0.707
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.869
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.869
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.869
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.717
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.707
Cla000556 Citrullus lanatus Cla000556 I 0.869
Ca_14605 Cicer arietinum Ca_14605 I 0.879
Ca_13575 Cicer arietinum Ca_13575 I 0.727
Ca_04287 Cicer arietinum Ca_04287 I 0.909
MDP0000318244 Malus domestica MDP0000318244 I 0.879
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.909
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.879
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.859
Si037583m.g Setaria italica Si037583m.g I 0.747
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.889
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.889
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.869
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.747
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.747
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.869
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.899
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.798
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.909
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.899
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.712
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.929
PK27389.1 Cannabis sativa PK27389.1 I 0.909
PK24688.1 Cannabis sativa PK24688.1 I 0.717
PK23777.1 Cannabis sativa PK23777.1 I 0.919
PK17019.1 Cannabis sativa PK17019.1 I 0.794
PK11564.1 Cannabis sativa PK11564.1 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
MDP0000822986 Malus domestica MDP0000822986 I 0.899
MDP0000319331 Malus domestica MDP0000319331 I 0.879
MDP0000284409 Malus domestica MDP0000284409 I 0.707
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.859
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.889
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.899
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.869
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.869
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.919
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.848
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000218986 Malus domestica MDP0000218986 I 0.879
MDP0000123013 Malus domestica MDP0000123013 I 1.000
MDP0000121203 Malus domestica MDP0000121203 I 0.707
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.899
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.808
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.727
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.808
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.899
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.737
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.737
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.747
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.807
OS05G0123000 Oryza sativa OS05G0123000 I 0.807
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.919
OBART03G28270 Oryza barthii OBART03G28270 I 0.705
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.879
OB05G11740 Oryza brachyantha OB05G11740 I 0.879
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.899
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.889
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.747
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.737
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.889
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.889
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.737
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.758
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.919
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.929
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.737
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.717
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.859
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.879
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.889
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.747
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.807
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.737
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.899
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.929
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.909
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.828
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.879
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.897
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.848
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.727
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.709
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.879
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.889
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.761
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.848
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.828
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.778
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.747
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.848
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.768
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.798
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.848
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.792
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.869
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.818
MDP0000183071 Malus domestica MDP0000183071 N 0.739
Bo8g112780 Brassica oleracea Bo8g112780 N 0.818
Bo5g008590 Brassica oleracea Bo5g008590 N 0.838
Bo4g165420 Brassica oleracea Bo4g165420 N 0.808
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.848
Bo3g040220 Brassica oleracea Bo3g040220 N 0.798
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.808
Bra018675 Brassica rapa Bra018675 N 0.838
Bo01039s010 Brassica oleracea Bo01039s010 N 0.818
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.818
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.818
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.869
LBD11 Arabidopsis thaliana AT2G28500 N 0.808
Bra000491 Brassica rapa Bra000491 N 0.798
Bra011942 Brassica rapa Bra011942 N 0.808
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.879
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.818
MDP0000879799 Malus domestica MDP0000879799 N 0.929
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.818
F775_02335 Aegilops tauschii F775_02335 N 0.788
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.768
Bra035698 Brassica rapa Bra035698 N 0.808
Bra031599 Brassica rapa Bra031599 N 0.808
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.828
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.828
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.788
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.859
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.879
Si024430m.g Setaria italica Si024430m.g N 0.848
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.758
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.737
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.737
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.727
Ca_02507 Cicer arietinum Ca_02507 N 0.838
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.838
OS03G0287400 Oryza sativa OS03G0287400 N 0.818
Cla005133 Citrullus lanatus Cla005133 N 0.798
Cla005134 Citrullus lanatus Cla005134 N 0.848
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.818
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.869
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.818
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.793
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.747
Si037280m.g Setaria italica Si037280m.g N 0.798
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.838
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.828
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.807
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.818
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.818
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.818
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.768
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.727
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.778
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.808
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.758
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.843
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.780
OBART05G01640 Oryza barthii OBART05G01640 N 0.846
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.838
OBART03G13260 Oryza barthii OBART03G13260 N 0.818
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.838
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.828
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.828
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.818
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.838
OB03G23270 Oryza brachyantha OB03G23270 N 0.798
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.818
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.848
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.818
mgf022524m Mimulus guttatus mgf022524m N 0.859
mgf019622m Mimulus guttatus mgf019622m N 0.808
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.818
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.818
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.767
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.919
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.818
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.879
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.747
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.818
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.818
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.737
mgf015666m Mimulus guttatus mgf015666m N 0.859
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.775