MDP0000159122 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000159122 T247083_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.706 0.706
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.706 0.706
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000159122 LOB 23 108

Links

Other LOB family TFs
Other Malus domestica TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.800
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.800
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.800
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.788
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.788
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.788
Pm028642 Prunus mume Pm028642 I 0.788
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.788
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.788
LBD20 Arabidopsis thaliana AT3G03760 I 0.788
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.788
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.788
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.776
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.753
Cla002965 Citrullus lanatus Cla002965 I 0.753
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.742
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.718
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.718
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.718
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.718
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.718
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.718
MDP0000322059 Malus domestica MDP0000322059 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.706
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.706
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.706
OBART03G10450 Oryza barthii OBART03G10450 I 0.706
MDP0000254224 Malus domestica MDP0000254224 I 0.706
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.706
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.706
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.706
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.706
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.706
OS03G0246900 Oryza sativa OS03G0246900 I 0.706
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.706
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.706
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.706
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.706
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.706
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.706
LBD16 Arabidopsis thaliana AT2G42430 D 0.706
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.706
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.701