MDP0000167580 (Malus domestica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 MDP0000167580 T247084_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.840 0.840
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.840 0.840
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.740 0.740
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000167580 LOB 139 188

Links

Other LOB family TFs
Other Malus domestica TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000278334 Malus domestica MDP0000278334 I 0.940
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.920
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.920
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.920
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.920
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.920
PK21617.1 Cannabis sativa PK21617.1 I 0.913
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.900
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.900
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.900
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.900
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.900
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.900
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.900
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.900
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.900
LBD15 Arabidopsis thaliana AT2G40470 I 0.900
Bo4g190210 Brassica oleracea Bo4g190210 I 0.900
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.900
Bra004572 Brassica rapa Bra004572 I 0.880
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.880
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.880
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.880
Bra016992 Brassica rapa Bra016992 I 0.880
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.880
Bo4g012620 Brassica oleracea Bo4g012620 I 0.880
OBART05G04570 Oryza barthii OBART05G04570 I 0.860
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.860
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.860
OS05G0165450 Oryza sativa OS05G0165450 I 0.860
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.860
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.860
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.860
29957.m001411 Ricinus communis 29957.m001411 I 0.860
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.860
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.860
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.860
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.840
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.840
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.840
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.840
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.840
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.840
OS01G0825000 Oryza sativa OS01G0825000 I 0.840
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.840
Si012018m.g Setaria italica Si012018m.g I 0.840
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.840
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.840
Si004575m.g Setaria italica Si004575m.g I 0.840
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.840
F775_52636 Aegilops tauschii F775_52636 I 0.840
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.840
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.840
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.840
mgf020556m Mimulus guttatus mgf020556m I 0.840
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.840
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.840
OBART01G35680 Oryza barthii OBART01G35680 I 0.840
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.840
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.840
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.840
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.840
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.840
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.840
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.820
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.820
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.820
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.800
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.800
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.780
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.780
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.760
Pm011040 Prunus mume Pm011040 I 0.760
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.760
MDP0000268890 Malus domestica MDP0000268890 I 0.760
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.760
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.760
30169.m006340 Ricinus communis 30169.m006340 I 0.760
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.760
MDP0000284409 Malus domestica MDP0000284409 I 0.760
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.760
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.740
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.740
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.740
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.740
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.740
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.740
MDP0000121203 Malus domestica MDP0000121203 I 0.740
MDP0000277239 Malus domestica MDP0000277239 I 0.740
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.740
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.740
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.740
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.740
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.740
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.740
PK24688.1 Cannabis sativa PK24688.1 I 0.740
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.740
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.740
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.740
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.740
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.740
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.740
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.740
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.740
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.740
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.740
LBD4 Arabidopsis thaliana AT1G31320 D 0.740
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.740
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.740
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.740
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.740
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.740
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.740
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.740
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.740
mgf026046m Mimulus guttatus mgf026046m I 0.720
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.720
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.720
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.720
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.720
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.720
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.720
LjSGA_010274.2 Lotus japonicus LjSGA_010274.2 N 0.720
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.720
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.720
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.720
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.720
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.720
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.700
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.700
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.700
Bo4g151770 Brassica oleracea Bo4g151770 I 0.700
Ca_13388 Cicer arietinum Ca_13388 I 0.700
Bo5g021980 Brassica oleracea Bo5g021980 I 0.700
Bra032153 Brassica rapa Bra032153 I 0.700
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.700
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.700
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.700
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.700
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.700
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.700
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.700
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.700
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.700
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.700
Cla009336 Citrullus lanatus Cla009336 I 0.700
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.700
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.700
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.700
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.700
TCM_000560 Theobroma cacao TCM_000560 I 0.700
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.700